PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000836.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YB
Protein Properties Length: 253aa    MW: 26986.9 Da    PI: 4.3254
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000836.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB141.91.6e-4428102175
                           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlG 75 
                                     vreqdr+lPian+srimkk+lP+n+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlG
  FANhyb_rscf00000836.1.g00005.1  28 VREQDRYLPIANISRIMKKALPQNGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLG 102
                                     69************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.33E-3019102IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.0E-4222102IPR009072Histone-fold
PfamPF008083.4E-283498IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-126280No hitNo description
PROSITE patternPS0068506581IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-128199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAEVPTSPPG GNDSGGEQSP QNGSSSSVRE QDRYLPIANI SRIMKKALPQ NGKIAKDAKD  60
TVQECVSEFI SFVTSEASDK CQKEKRKTIN GDDLLWAMAT LGDLCSMFDE GDAKGSARGG  120
EGSAKGNPVG AMPGQNSQFV HQPPLNYVSS QDDPIAKLSN IQAGMDEGEG DTTLGCWIVF  180
LLDDLDPKPN PNRINSLFQL GSLSQSSLAA VVQGENQKRE DMDFGHWSLD PNDVSSISCD  240
AGTAFGCSFY AKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B9e-3827102277NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-3827102277NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307423.12e-97PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
SwissprotQ8VYK43e-55NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2P6SJN41e-89A0A2P6SJN4_ROSCH; Putative transcription factor Hap3/NF-YB family
STRINGXP_004307423.19e-97(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.32e-57nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]