PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000814.1.g00005.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

SRS

Protein Properties

Length: 1155aa MW: 128889 Da PI: 6.6993

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000814.1.g00005.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.5	4.3e-69	122	269	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelksk 81 sg+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerq+q +a+++++ ++++ + +kr+re+ ++ FANhyb_rscf00000814.1.g00005.1 122 SGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQFSALQQQQ-QQQQLQFPKRQREN-QA 198 7899**********************************************999987766.55677788888886.78 PP DUF702 82 kqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s+l++ +l++++s le + +P+evss+avfrcvrvs++dd ee++aYqtav+igGhvfkG+LydqGl++ FANhyb_rscf00000814.1.g00005.1 199 GGSSLACVRLPTNTSG--LELAPFPAEVSSPAVFRCVRVSAMDDVEEQYAYQTAVNIGGHVFKGLLYDQGLDN 269 8999999999998765..88899*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.4E-65	124	268	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.9E-26	126	168	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.6E-27	220	267	IPR006511	Lateral Root Primordium type 1, C-terminal
Pfam	PF01496	1.7E-8	498	550	IPR002490	V-type ATPase, V0 complex, 116kDa subunit family
Pfam	PF01496	6.3E-223	616	1146	IPR002490	V-type ATPase, V0 complex, 116kDa subunit family

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015991	Biological Process	ATP hydrolysis coupled proton transport
GO:0033179	Cellular Component	proton-transporting V-type ATPase, V0 domain
GO:0015078	Molecular Function	hydrogen ion transmembrane transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 1155 aa Download sequence Send to blast
MAGFFGSLGG GRDQGVRNKQ GGDDERGGNL NLFSYGNEEI YNNSKGGFEL WPQYHPHHPH 60 HHHHQQQSLN YYAFGVDPSR RSNHNNLEGN VSDDSSSGLR LAVMRQGSGT GGGGGSGTGL 120 GSGGMNCQDC GNQAKKDCPH LRCRTCCKSR GFQCQTHVKS TWVPAAKRRE RQEQFSALQQ 180 QQQQQQLQFP KRQRENQAGG SSLACVRLPT NTSGLELAPF PAEVSSPAVF RCVRVSAMDD 240 VEEQYAYQTA VNIGGHVFKG LLYDQGLDNA NYTSATTAGE SSSGGQQDGG GGHHNNQQQL 300 NLITTPTSTS ANPPTATLLD PTMVFPTPLN AFVADITECG FWVAVNSKPL PSFPCLSGVL 360 PEIYNSSPYR VAVFALKELE YDSDLLDEHT RLEGRSEAPI AVTSIVYVEG LIAVVTAKTL 420 AAGYVFMTRY IMESISSVIN VRGFCLIPWF SRASGAFSKV YNVNVVQTCL CVSYIALPLS 480 VMSLIGTTAW LAGYSFSVEV EKNAFIIFYS GERAKSKILK ICEAFGANRY PFTDDLGKQF 540 QMITEVATVL LLYMYTKSFR ILQMLSSLAL RSCDLVAIVW SQVASRMREA VMQRKNFKSL 600 VNLLDMNHHI LVAIVVSGKI SELKSTIDAG LLHRNSLLQT IGHQYEQWNL LVKKEKSIYH 660 TLNMLSIDVT KMCLVAEGWC PVSASLQIQN ALQQATYDSN SQVGAIFQVL HTKESPPTYF 720 RTNKFTTAFQ EIVDAYGVAK YQEANPGVYT IVTFPFLFAV MFGDWGHGIC LLLATLYFII 780 SERKFSNQKL GDIIEMTFGG RYVIFMMALF SIYTGLIYNE FFSVPFELFG PSAYACRDPS 840 CRDATTVGLT KVRDTYPFGL DPKWHGSRSE LPFLNSLKMK MSILLGVAQM NLGIVLSYFN 900 AKFFADKLNV WYQFVPQMIF LNSLFGYLSL LIIVKWCTGS KADLYHVMIY MFLSPFDDLG 960 ENQLFWGQGF LQVLLLLSAL VAVPWMLFPK PYFLKKQHEE RHQGQSYALL LSGEDPLDDD 1020 QEDHHNSKDH EEFEFSEIFV HQLIHTIEFV LGAVSNTASY LRLWALSLAH SELSSVFYDK 1080 VLLLAWGYDN VIILIIGIIV FISATGGVLL VMETLSAFLH ALRLHWVEFM NKFYEGAGYK 1140 FYPFSFALLS SEDDD

Sequence ? help Back to Top

Protein Sequence Length: 1155 aa Download sequence Send to blast

MAGFFGSLGG GRDQGVRNKQ GGDDERGGNL NLFSYGNEEI YNNSKGGFEL WPQYHPHHPH  60
HHHHQQQSLN YYAFGVDPSR RSNHNNLEGN VSDDSSSGLR LAVMRQGSGT GGGGGSGTGL  120
GSGGMNCQDC GNQAKKDCPH LRCRTCCKSR GFQCQTHVKS TWVPAAKRRE RQEQFSALQQ  180
QQQQQQLQFP KRQRENQAGG SSLACVRLPT NTSGLELAPF PAEVSSPAVF RCVRVSAMDD  240
VEEQYAYQTA VNIGGHVFKG LLYDQGLDNA NYTSATTAGE SSSGGQQDGG GGHHNNQQQL  300
NLITTPTSTS ANPPTATLLD PTMVFPTPLN AFVADITECG FWVAVNSKPL PSFPCLSGVL  360
PEIYNSSPYR VAVFALKELE YDSDLLDEHT RLEGRSEAPI AVTSIVYVEG LIAVVTAKTL  420
AAGYVFMTRY IMESISSVIN VRGFCLIPWF SRASGAFSKV YNVNVVQTCL CVSYIALPLS  480
VMSLIGTTAW LAGYSFSVEV EKNAFIIFYS GERAKSKILK ICEAFGANRY PFTDDLGKQF  540
QMITEVATVL LLYMYTKSFR ILQMLSSLAL RSCDLVAIVW SQVASRMREA VMQRKNFKSL  600
VNLLDMNHHI LVAIVVSGKI SELKSTIDAG LLHRNSLLQT IGHQYEQWNL LVKKEKSIYH  660
TLNMLSIDVT KMCLVAEGWC PVSASLQIQN ALQQATYDSN SQVGAIFQVL HTKESPPTYF  720
RTNKFTTAFQ EIVDAYGVAK YQEANPGVYT IVTFPFLFAV MFGDWGHGIC LLLATLYFII  780
SERKFSNQKL GDIIEMTFGG RYVIFMMALF SIYTGLIYNE FFSVPFELFG PSAYACRDPS  840
CRDATTVGLT KVRDTYPFGL DPKWHGSRSE LPFLNSLKMK MSILLGVAQM NLGIVLSYFN  900
AKFFADKLNV WYQFVPQMIF LNSLFGYLSL LIIVKWCTGS KADLYHVMIY MFLSPFDDLG  960
ENQLFWGQGF LQVLLLLSAL VAVPWMLFPK PYFLKKQHEE RHQGQSYALL LSGEDPLDDD  1020
QEDHHNSKDH EEFEFSEIFV HQLIHTIEFV LGAVSNTASY LRLWALSLAH SELSSVFYDK  1080
VLLLAWGYDN VIILIIGIIV FISATGGVLL VMETLSAFLH ALRLHWVEFM NKFYEGAGYK  1140
FYPFSFALLS SEDDD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3j9t_b	1e-120	616	1146	277	822	V-type proton ATPase subunit a, vacuolar isoform
3j9u_b	1e-120	616	1146	277	822	V-type proton ATPase subunit a, vacuolar isoform
3j9v_b	1e-120	616	1146	277	822	V-type proton ATPase subunit a, vacuolar isoform
5vox_b	1e-120	616	1146	277	822	V-type proton ATPase subunit a, vacuolar isoform
5voy_b	1e-120	616	1146	277	822	V-type proton ATPase subunit a, vacuolar isoform
5voz_b	1e-120	616	1146	277	822	V-type proton ATPase subunit a, vacuolar isoform
6c6l_A	1e-120	616	1146	277	822	V-type proton ATPase subunit a, vacuolar isoform
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. Involved in vacuolar nutrient storage (e.g. accumulation and storage of nitrate) and in tolerance to some toxic ions (e.g. zinc ions sequestration in vacuoles). {ECO:0000269\|PubMed:20133698}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004291813.1	0.0	PREDICTED: V-type proton ATPase subunit a3-like
Swissprot	Q8W4S4	0.0	VHAA3_ARATH; V-type proton ATPase subunit a3
TrEMBL	A0A2P6PYY8	0.0	A0A2P6PYY8_ROSCH; V-type proton ATPase subunit a
STRING	XP_004291813.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	5e-64	SHI-related sequence 7

Publications ? help Back to Top
Sze H,Schumacher K,Müller ML,Padmanaban S,Taiz L A simple nomenclature for a complex proton pump: VHA genes encode the vacuolar H(+)-ATPase. Trends Plant Sci., 2002. 7(4): p. 157-61 [PMID:11950611] Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709] Shimaoka T, et al. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Plant Cell Physiol., 2004. 45(6): p. 672-83 [PMID:15215502] Kluge C, et al. Subcellular distribution of the V-ATPase complex in plant cells, and in vivo localisation of the 100 kDa subunit VHA-a within the complex. BMC Cell Biol., 2004. 5: p. 29 [PMID:15310389] Borner GH, et al. Analysis of detergent-resistant membranes in Arabidopsis. Evidence for plasma membrane lipid rafts. Plant Physiol., 2005. 137(1): p. 104-16 [PMID:15618420] Dettmer J,Hong-Hermesdorf A,Stierhof YD,Schumacher K Vacuolar H+-ATPase activity is required for endocytic and secretory trafficking in Arabidopsis. Plant Cell, 2006. 18(3): p. 715-30 [PMID:16461582] Endler A, et al. Identification of a vacuolar sucrose transporter in barley and Arabidopsis mesophyll cells by a tonoplast proteomic approach. Plant Physiol., 2006. 141(1): p. 196-207 [PMID:16581873] Nelson CJ,Hegeman AD,Harms AC,Sussman MR A quantitative analysis of Arabidopsis plasma membrane using trypsin-catalyzed (18)O labeling. Mol. Cell Proteomics, 2006. 5(8): p. 1382-95 [PMID:16635983] Marmagne A, et al. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Mol. Cell Proteomics, 2007. 6(11): p. 1980-96 [PMID:17644812] Brüx A, et al. Reduced V-ATPase activity in the trans-Golgi network causes oxylipin-dependent hypocotyl growth Inhibition in Arabidopsis. Plant Cell, 2008. 20(4): p. 1088-100 [PMID:18441211] Krebs M, et al. Arabidopsis V-ATPase activity at the tonoplast is required for efficient nutrient storage but not for sodium accumulation. Proc. Natl. Acad. Sci. U.S.A., 2010. 107(7): p. 3251-6 [PMID:20133698] Rienmüller F, et al. Luminal and cytosolic pH feedback on proton pump activity and ATP affinity of V-type ATPase from Arabidopsis. J. Biol. Chem., 2012. 287(12): p. 8986-93 [PMID:22215665] Tang RJ, et al. Tonoplast calcium sensors CBL2 and CBL3 control plant growth and ion homeostasis through regulating V-ATPase activity in Arabidopsis. Cell Res., 2012. 22(12): p. 1650-65 [PMID:23184060] Bak G, et al. Rapid structural changes and acidification of guard cell vacuoles during stomatal closure require phosphatidylinositol 3,5-bisphosphate. Plant Cell, 2013. 25(6): p. 2202-16 [PMID:23757398] Feng QN,Zhang Y,Li S Tonoplast targeting of VHA-a3 relies on a Rab5-mediated but Rab7-independent vacuolar trafficking route. J Integr Plant Biol, 2017. 59(4): p. 230-233 [PMID:28198146]