PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000814.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 152aa    MW: 17673.7 Da    PI: 10.6217
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000814.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.2e-28959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krien +nrqvt+skRrng++KKA+EL vLCda+v+++++ss+gkl+e++s
  FANhyb_rscf00000814.1.g00004.1  9 KRIENATNRQVTYSKRRNGLFKKANELTVLCDAKVSLLMVSSSGKLREFIS 59
                                    79***********************************************86 PP
2K-box64.44.2e-2271142172
                           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                                     yqk  g +l+++++e++q++l+kLk+ ++ L+r++R++lGe+L++L + +L +Le+++e++++ +R +K   
  FANhyb_rscf00000814.1.g00004.1  71 YQKLLGIDLWKSHYETMQENLKKLKETNKILKRQIRQRLGECLNDLRFADLLSLEKEMETAVEVVRLRKVVQ 142
                                     78899999************************************************************9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.23161IPR002100Transcription factor, MADS-box
CDDcd002654.97E-37280No hitNo description
PRINTSPR004042.0E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-36395IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.6E-1382140IPR002487Transcription factor, K-box
PROSITE profilePS5129710.80884152IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MARGKIQIKR IENATNRQVT YSKRRNGLFK KANELTVLCD AKVSLLMVSS SGKLREFISP  60
STTTKQVYDE YQKLLGIDLW KSHYETMQEN LKKLKETNKI LKRQIRQRLG ECLNDLRFAD  120
LLSLEKEMET AVEVVRLRKV VQIFAPRSLG VQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-14159159MEF2 CHIMERA
6byy_B1e-14159159MEF2 CHIMERA
6byy_C1e-14159159MEF2 CHIMERA
6byy_D1e-14159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291814.12e-93PREDICTED: floral homeotic protein PMADS 1
SwissprotE0CPH43e-69AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLQ5VJN12e-91Q5VJN1_FRAAN; AP3
STRINGXP_004291814.17e-93(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-62MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]