PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000796.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 320aa    MW: 36518.1 Da    PI: 6.2413
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000796.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.97.2e-082693022154
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  FANhyb_rscf00000796.1.g00005.1 269 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 302
                                     469*****************************87 PP
2ELK29.32e-10223244122
                             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                     ELKh+L+++Y+++++++++E++
  FANhyb_rscf00000796.1.g00005.1 223 ELKHELKQGYKEKIVDIREEIL 244
                                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.5E-1756100IPR005540KNOX1
PfamPF037901.3E-165898IPR005540KNOX1
SMARTSM012562.1E-23112167IPR005541KNOX2
PfamPF037911.4E-17117166IPR005541KNOX2
SMARTSM011886.1E-4223244IPR005539ELK domain
PfamPF037897.0E-7223244IPR005539ELK domain
PROSITE profilePS512139.969223243IPR005539ELK domain
PROSITE profilePS5007111.726243306IPR001356Homeobox domain
SuperFamilySSF466894.71E-16245308IPR009057Homeodomain-like
SMARTSM003895.0E-11245310IPR001356Homeobox domain
CDDcd000867.05E-12246307No hitNo description
Gene3DG3DSA:1.10.10.602.9E-25250308IPR009057Homeodomain-like
PfamPF059201.3E-17263302IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAFHHQTPHE MAFHGSFPDT QQPPQLAPTW LNAPPFRSSP SGKRGDGEDE LEGESGRFKA  60
DIVGHPLYEQ LVSAHVSCLR IATPVDQLPK IDEQLVQSQR VVDKYSAMRA NGEFGVMDEK  120
ELDLFMTNYV LLLCSFKEQL QQHVRVHAME AVMACWELEQ SLQSLTGVST AEGTGATMSD  180
DDEQFDGDIS SYDASLDGHD NMGFGPLVPT ESERSLMERV RQELKHELKQ GYKEKIVDIR  240
EEILRKRRAG KLPGDTTSVL KAWWQTHSKW PYPTEEDKAR LVQETGLQLK QINNWFINQR  300
KRNWHSNLST TSVLKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299319RKRNWHSNLSTTSVLKSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287231.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-155KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2P6RIH80.0A0A2P6RIH8_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004287231.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-158KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]