PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000789.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 771aa MW: 87012 Da PI: 9.3625

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000789.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	382.7	4.5e-117	395	766	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 l++lL+++A+av+++d++ a++lL++++ ++sp gd +qRla++f+ +L+arla+++s++yk + +++t+ +++l+ FANhyb_rscf00000789.1.g00004.1 395 LRSLLITVAQAVAADDHRTANELLKKVRLHSSPFGDGTQRLAHCFADGLEARLAGTGSQIYKGFVSKRTP---AADVLK 470 689************************************************************99999...9* PP GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..ske 156 a++lf ++P+ k+s+++ N++I+ ++ rvH+iDf+i +G+QWp+L+q +a R++gpp+lRiTg++ p++g +e FANhyb_rscf00000789.1.g00004.1 471 AYHLFLAACPFKKMSNFVSNKTIMTLSQNTMRVHVIDFGIHYGFQWPTLIQRIAMREGGPPKLRITGIEFPQPGfrPAE 549 *********************************************************************9* PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235 +eetg+rLa +Ae+++vpfe+n+ +ak++e+++leeL+++++E l+Vn+ ++ ++lldesv+++s+r++vLkl++++s FANhyb_rscf00000789.1.g00004.1 550 GVEETGRRLAAYAETFHVPFEYNA-IAKKWENITLEELKIERDEFLVVNCLYRGKNLLDESVAVDSARNRVLKLIRRIS 627 ********************.7************************************************* PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314 P+++++ + +n++ F++rf eal ++s++fd+le+ +pre++er+ +E+e++gre+ nv+aceg er+er e++++ FANhyb_rscf00000789.1.g00004.1 628 PDIFIHGVINGAYNAPFFVTRFREALFHFSSMFDMLETVVPREDRERMLIEKEIIGREALNVIACEGWERVERPESYKQ 706 *************************************************************************** PP GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 W+ r +aGF ++p++ + +k a +++ + + + ++e+ +l++gWk+r+++++SaW+ FANhyb_rscf00000789.1.g00004.1 707 WQVRNLRAGFVQIPFDRELVKHAAWKVKTSYHKDFVIDEDGRWLLQGWKGRTIFALSAWK 766 ***************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.024	369	746	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-114	395	766	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MTMDPRLRSF TDSLNGVRLS NRPFSFLSHQ NIVPQSPFGS HPLVGSDYRE LNYPTPDVTP 60 NDLSSSVSSL SHEEEDCDFS DEVLKYINQM LMEEDMEDKT CMLQESLELQ AAEKSFYDVL 120 GKKYPPSPEV NHEFSIPYGE IPDEGFSGNG SNYVSSSSSN SGFSGNGSNY ITSSSNSGSY 180 FSDSSVIQSP GGYMSQFQGL PPYNISHSSY GSSTRVSSLD ELVDSPSSIV TSLISVLRVN 240 LFGSSIRGSK RLVGFFLVRQ IWLLILMRIG CQLKLRRLGR KRKLSKLRKR MKVRILPVGH 300 RGRKKLYRED DEDGEDNRSS KQPAVSTEST LRSEMFDKIL LCSLGPGKEH LISKREELQN 360 GMIKSVPQNE KSKGSNGGKG RGKKQSGNKK DVVDLRSLLI TVAQAVAADD HRTANELLKK 420 VRLHSSPFGD GTQRLAHCFA DGLEARLAGT GSQIYKGFVS KRTPAADVLK AYHLFLAACP 480 FKKMSNFVSN KTIMTLSQNT MRVHVIDFGI HYGFQWPTLI QRIAMREGGP PKLRITGIEF 540 PQPGFRPAEG VEETGRRLAA YAETFHVPFE YNAIAKKWEN ITLEELKIER DEFLVVNCLY 600 RGKNLLDESV AVDSARNRVL KLIRRISPDI FIHGVINGAY NAPFFVTRFR EALFHFSSMF 660 DMLETVVPRE DRERMLIEKE IIGREALNVI ACEGWERVER PESYKQWQVR NLRAGFVQIP 720 FDRELVKHAA WKVKTSYHKD FVIDEDGRWL LQGWKGRTIF ALSAWKPSEG A

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MTMDPRLRSF TDSLNGVRLS NRPFSFLSHQ NIVPQSPFGS HPLVGSDYRE LNYPTPDVTP  60
NDLSSSVSSL SHEEEDCDFS DEVLKYINQM LMEEDMEDKT CMLQESLELQ AAEKSFYDVL  120
GKKYPPSPEV NHEFSIPYGE IPDEGFSGNG SNYVSSSSSN SGFSGNGSNY ITSSSNSGSY  180
FSDSSVIQSP GGYMSQFQGL PPYNISHSSY GSSTRVSSLD ELVDSPSSIV TSLISVLRVN  240
LFGSSIRGSK RLVGFFLVRQ IWLLILMRIG CQLKLRRLGR KRKLSKLRKR MKVRILPVGH  300
RGRKKLYRED DEDGEDNRSS KQPAVSTEST LRSEMFDKIL LCSLGPGKEH LISKREELQN  360
GMIKSVPQNE KSKGSNGGKG RGKKQSGNKK DVVDLRSLLI TVAQAVAADD HRTANELLKK  420
VRLHSSPFGD GTQRLAHCFA DGLEARLAGT GSQIYKGFVS KRTPAADVLK AYHLFLAACP  480
FKKMSNFVSN KTIMTLSQNT MRVHVIDFGI HYGFQWPTLI QRIAMREGGP PKLRITGIEF  540
PQPGFRPAEG VEETGRRLAA YAETFHVPFE YNAIAKKWEN ITLEELKIER DEFLVVNCLY  600
RGKNLLDESV AVDSARNRVL KLIRRISPDI FIHGVINGAY NAPFFVTRFR EALFHFSSMF  660
DMLETVVPRE DRERMLIEKE IIGREALNVI ACEGWERVER PESYKQWQVR NLRAGFVQIP  720
FDRELVKHAA WKVKTSYHKD FVIDEDGRWL LQGWKGRTIF ALSAWKPSEG A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-48	402	767	26	380	Protein SCARECROW
5b3h_A	7e-48	402	767	25	379	Protein SCARECROW
5b3h_D	7e-48	402	767	25	379	Protein SCARECROW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	286	GRKRKLSKL
2	287	293	RKRMKVR
3	287	304	RKRMKVRILPVGHRGRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011466550.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2P6R9Y8	0.0	A0A2P6R9Y8_ROSCH; Putative transcription factor GRAS family
STRING	XP_004302737.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein