PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000787.1.g00009.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 290aa    MW: 32255.3 Da    PI: 9.3788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000787.1.g00009.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-171562148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    rg WT++Ede+l   v+++G g+W++ +++ g+ R++k+c++rw +yl
  FANhyb_rscf00000787.1.g00009.1 15 RGQWTPQEDEKLFSFVQKHGHGSWRSLPQKAGLQRCGKSCRLRWKNYL 62
                                    89********************************************97 PP
2Myb_DNA-binding52.31.3e-1668113148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg+++ +Ed+ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l
  FANhyb_rscf00000787.1.g00009.1  68 RGNFSLQEDQTIIQLHALLGNR-WSAIAAQLP-KRTDNEVKNYWNTHL 113
                                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1241062IPR017930Myb domain
SuperFamilySSF466892.85E-3012109IPR009057Homeodomain-like
SMARTSM007171.5E-121464IPR001005SANT/Myb domain
PfamPF002491.6E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231669IPR009057Homeodomain-like
CDDcd001671.90E-111862No hitNo description
PROSITE profilePS5129425.40863117IPR017930Myb domain
SMARTSM007172.3E-1667115IPR001005SANT/Myb domain
PfamPF002491.1E-1568113IPR001005SANT/Myb domain
CDDcd001677.73E-1270113No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGKQSNTAAS PGIKRGQWTP QEDEKLFSFV QKHGHGSWRS LPQKAGLQRC GKSCRLRWKN  60
YLNPDIKRGN FSLQEDQTII QLHALLGNRW SAIAAQLPKR TDNEVKNYWN THLKKRLAKK  120
GFDPVTHKPK TAILASANGG DPKNLSNLSH IAQWETARLQ AEARFARQSK LLINNDQAPV  180
SDMNERAREI LLLLKSVLAA GSGGGICSAI QFGQEIDSFG NVDVEGLLSN YDQFMAPTTS  240
TSVPDFSEVF GESAGTHNEY GELLEALILQ HNHNSAGFEV RDARSLEQYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28111173108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301140.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9LE638e-86MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2P6P2T81e-124A0A2P6P2T8_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004301140.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-87myb domain protein 106