PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000745.1.g00008.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 734aa MW: 85079.8 Da PI: 7.6993

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000745.1.g00008.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.3	7e-20	48	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwe 77 kfY +YA+ vGFsvrk+ +++ ++ + r+++Cs+eg+++ +k +++ r++++etrtgC+ + v+ + +++++ FANhyb_rscf00000745.1.g00008.1 48 KFYYDYAHVVGFSVRKDIKRRG-KDIDVQIRQWYCSCEGFKNVDKAIsAKRVRTPQKETRTGCEVAFLVNYCSkKKQYV 125 6**************99998.6666999999****99887646777889************99899* PP FAR1 78 vtkleleHnHela 90 v+k++++HnH+l+ FANhyb_rscf00000745.1.g00008.1 126 VKKFDTKHNHPLV 138 ***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-18	48	138	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	1.2	67	87	IPR007527	Zinc finger, SWIM-type
Pfam	PF10551	3.6E-28	260	354	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.916	494	532	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0011	507	534	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	0.018	509	524	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MESDLPMNES EQSEVNAPSQ QYDGKPFTAL CRDDLVGKYF ETLEAAEKFY YDYAHVVGFS 60 VRKDIKRRGK DIDVQIRQWY CSCEGFKNVD KAISAKRVRT PQKETRTGCE VAFLVNYCSK 120 KKQYVVKKFD TKHNHPLVLP ALTQFVRSAI NCRDSDVAQV TALRSVSIRT YHAYEYLVDK 180 AGGYVNVGFR IKDLYNKLDA SRREIMLEGD TEATLSYLNG RGDGEEQFYC KFSVDEDNKL 240 CNLFWRDTRS LVDYESFGDV LLFDTTYKTN CYEKPLVLFV GSSNHLTSIV FGCALLLDET 300 IDTYVWVLET FISSMKGKKP IDVLTDSDES MRRAIEIVLP GCPHRLCSWH IAKNVTANVK 360 NQKLRERFIK IMWESTTPEE FERSWTNMIQ EFSPKNTRWF DMMYEKREKW VEAYCKGKFF 420 CPNAEHATLY SKHEMKTQLY MLENDASKIY TDNVFYVVRK EIERVGGLIT EAAVQSDGFK 480 TYIMWRHSRV DRRFSVVYFQ GEGDPRFVCS CQKMEYEGIP CCHIFNVLKH ESISKIPISL 540 KMKRWMIVEK SDAEKLDAHM ATNVTEDGES KSRFGYISDR LSKLSFHASS SKELYDMVNE 600 EVDKLEKKLE AVSIVPEVRR QEGGCGRHEN LIRDPNVVKT KGKKKEQRKT TGKQDRKCKD 660 EIDGEGNIPQ ANEVDLSSRI PYQHQVQQVP FPPGYQYQGF PGMQNFPTNM YFNGMQNLPS 720 GHPQMYGPSL FDPR

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MESDLPMNES EQSEVNAPSQ QYDGKPFTAL CRDDLVGKYF ETLEAAEKFY YDYAHVVGFS  60
VRKDIKRRGK DIDVQIRQWY CSCEGFKNVD KAISAKRVRT PQKETRTGCE VAFLVNYCSK  120
KKQYVVKKFD TKHNHPLVLP ALTQFVRSAI NCRDSDVAQV TALRSVSIRT YHAYEYLVDK  180
AGGYVNVGFR IKDLYNKLDA SRREIMLEGD TEATLSYLNG RGDGEEQFYC KFSVDEDNKL  240
CNLFWRDTRS LVDYESFGDV LLFDTTYKTN CYEKPLVLFV GSSNHLTSIV FGCALLLDET  300
IDTYVWVLET FISSMKGKKP IDVLTDSDES MRRAIEIVLP GCPHRLCSWH IAKNVTANVK  360
NQKLRERFIK IMWESTTPEE FERSWTNMIQ EFSPKNTRWF DMMYEKREKW VEAYCKGKFF  420
CPNAEHATLY SKHEMKTQLY MLENDASKIY TDNVFYVVRK EIERVGGLIT EAAVQSDGFK  480
TYIMWRHSRV DRRFSVVYFQ GEGDPRFVCS CQKMEYEGIP CCHIFNVLKH ESISKIPISL  540
KMKRWMIVEK SDAEKLDAHM ATNVTEDGES KSRFGYISDR LSKLSFHASS SKELYDMVNE  600
EVDKLEKKLE AVSIVPEVRR QEGGCGRHEN LIRDPNVVKT KGKKKEQRKT TGKQDRKCKD  660
EIDGEGNIPQ ANEVDLSSRI PYQHQVQQVP FPPGYQYQGF PGMQNFPTNM YFNGMQNLPS  720
GHPQMYGPSL FDPR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P6RCK2	1e-164	A0A2P6RCK2_ROSCH; Putative transcription factor FAR family

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-69	FAR1-related sequence 5