PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000735.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 163aa    MW: 17819.2 Da    PI: 11.2626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000735.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20960156
                             AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                    ++++GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  FANhyb_rscf00000735.1.g00002.1  9 PHFRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGN 60
                                    689*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-27968No hitNo description
PfamPF008471.9E-13959IPR001471AP2/ERF domain
PROSITE profilePS5103222.31067IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-221068IPR016177DNA-binding domain
SMARTSM003807.9E-351073IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-311067IPR001471AP2/ERF domain
PRINTSPR003671.5E-101122IPR001471AP2/ERF domain
PRINTSPR003671.5E-103349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAGSVPGQPH FRGVRKRPWG RYAAEIRDPW KKTRVWLGTF DTPEEAALAY DGAARSLRGN  60
KAKTNFPAPL TRGGGGGGED LSLDLNVSSA QWASSHSGRL VEFLHTGVLK DVAKSENAAG  120
RRRRSWCPGL LGLRLWAAVW CLIFTSPSPS LAPSCRLQHS QQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-211073569ATERF1
3gcc_A3e-211073569ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295554.13e-75PREDICTED: ethylene-responsive transcription factor 12
TrEMBLA0A3S8T9135e-72A0A3S8T913_FRAAN; Transcription factor ERF60
STRINGXP_004295554.11e-74(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.18e-38ERF domain protein 12