PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000733.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 277aa    MW: 30730.5 Da    PI: 5.8889
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000733.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.2e-151462148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    +g W++eEde l+ + + +G+g +W   +++ g++R++k+c++rw++yl
  FANhyb_rscf00000733.1.g00002.1 14 KGQWSPEEDEALKTYLETHGSGgNWIHLPQKAGLRRCGKSCRLRWLNYL 62
                                    799********************************************97 PP
2Myb_DNA-binding48.91.5e-1569111246
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     g +T+eEd ++ ++  q+G++ W+ Ia+ m+ gRt++++k++w++
  FANhyb_rscf00000733.1.g00002.1  69 GHFTEEEDNIICNLYIQMGSR-WSYIAAQMP-GRTDNDVKNYWNT 111
                                     679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.04962IPR017930Myb domain
SuperFamilySSF466894.69E-2711109IPR009057Homeodomain-like
SMARTSM007171.4E-101364IPR001005SANT/Myb domain
PfamPF002496.5E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231569IPR009057Homeodomain-like
CDDcd001671.34E-81762No hitNo description
PROSITE profilePS5129422.48963117IPR017930Myb domain
SMARTSM007171.4E-1267115IPR001005SANT/Myb domain
PfamPF002491.6E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2470116IPR009057Homeodomain-like
CDDcd001673.26E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGQWSPE EDEALKTYLE THGSGGNWIH LPQKAGLRRC GKSCRLRWLN  60
YLRPDIKHGH FTEEEDNIIC NLYIQMGSRW SYIAAQMPGR TDNDVKNYWN TKLKKKYFLP  120
AKPSLTAKES KNPNASPLTL PCAPKLETSD EFQTQIHPTL MVSDSNSGLN AYDQCLSLNP  180
NPLYNSQLMG FSQFGATSVS MSQDGSSVSD SSSIAAVDNG LLHGNSFINE DAAGISMDFE  240
FGGLPYDVVN QMWFGEKASE VVHPTCSTSL DADFFFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-22141167107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458889.11e-171PREDICTED: LOW QUALITY PROTEIN: transcription factor RAX1-like
TrEMBLA0A2P6Q1361e-169A0A2P6Q136_ROSCH; Putative transcription factor MYB-HB-like family
STRINGEMJ283891e-108(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.15e-71myb domain protein 68