PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000712.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 247aa    MW: 26863.2 Da    PI: 8.3073
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000712.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.54e-124874127
                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                    ++++ C +++rtG C yG++C+F+H++
  FANhyb_rscf00000712.1.g00003.1 48 PGEPDCIYYLRTGLCGYGSNCRFNHPK 74
                                    5789*********************96 PP
2zf-CCCH39.68.6e-1392116327
                                     S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                     ++ C ++++tGtCkyG++CkF+H++
  FANhyb_rscf00000712.1.g00003.1  92 QPDCGYYLKTGTCKYGSTCKFHHPR 116
                                     789********************96 PP
3zf-CCCH41.52.3e-13137161327
                                     S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                     +++C++++rtG Ck+G+ CkF+H++
  FANhyb_rscf00000712.1.g00003.1 137 EKPCPYYMRTGSCKFGPACKFHHPQ 161
                                     689********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.4E-64774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5264775IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-94974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-65274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-55372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69989117IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-589116IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-793118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-595117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.704135162IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6136161IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-11137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-6138160IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MPDTRQAQKN AAPNQSDGNV EEAFWRLTIN ENQDGGGVAQ SNLYPDRPGE PDCIYYLRTG  60
LCGYGSNCRF NHPKYASQAA QYSGELPERV GQPDCGYYLK TGTCKYGSTC KFHHPRDRRG  120
AGPVLFNVLG LPMHQEEKPC PYYMRTGSCK FGPACKFHHP QPPSLGTALP AFGSTGSTVV  180
PSSGVPYTGG LSAWSFPRAP YVAGPLIATP QPYMPAVVLS PPQGVLPAHG WNTYVDSMFD  240
KFSHRPG
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304076.11e-169PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ94AD92e-77C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A2P6S1X51e-163A0A2P6S1X5_ROSCH; Putative transcription factor C3H family
STRINGXP_004304076.11e-169(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.26e-77C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]