PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000692.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 342aa    MW: 38099.1 Da    PI: 9.2028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000692.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-1784129147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  FANhyb_rscf00000692.1.g00004.1  84 RGHWRPAEDSKLKQLVAQFGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 129
                                     899*****************************.***********996 PP
2Myb_DNA-binding55.99.5e-18136179146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  FANhyb_rscf00000692.1.g00004.1 136 RRAFSEEEEERLLSAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 179
                                     678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.51479130IPR017930Myb domain
SMARTSM007178.9E-1483132IPR001005SANT/Myb domain
SuperFamilySSF466893.11E-2883177IPR009057Homeodomain-like
PfamPF002493.5E-1684129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2685137IPR009057Homeodomain-like
CDDcd001671.43E-1387128No hitNo description
PROSITE profilePS5129426.913131185IPR017930Myb domain
SMARTSM007177.6E-15135183IPR001005SANT/Myb domain
PfamPF002491.3E-14136178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-20138184IPR009057Homeodomain-like
CDDcd001671.45E-7147178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGSQQQSQMR CSDSSYRQDL NFFPSQLSLS NTTFGVVASS EMGYGVHDRK RKSTMSLNLA  60
GDESDHEDVI QNPAVAGRTK LCVRGHWRPA EDSKLKQLVA QFGPQNWNLI AEHLDGRSGK  120
SCRLRWFNQL DPRINRRAFS EEEEERLLSA HRLYGNKWAM IARLFPGRTD NAVKNHWHVI  180
MARKHREESN VFKRRKPSSN SQPQHDHDQQ DGTKNNASSD RSTISINTSN DESGSAASAS  240
TCTNLSLTPS NRPALLPSLF SNIKNPFQQQ KIFGSKMVAD SGRIKGNGNG QSSDSNSEVS  300
GEESVLTTYR TNNNNVSSMS GEDQIDKMSV IPFIDFLGVG ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-33831846107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301570.20.0PREDICTED: transcription factor MYB44-like isoform X1
TrEMBLA0A2P6PCM60.0A0A2P6PCM6_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004301570.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-71myb domain protein 105