PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000683.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 1194aa MW: 130055 Da PI: 6.1066

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000683.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.5	8.4e-10	582	623	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W +++ el++++++q+G++ ++ Ia+ ++ gRt+ q+k+++ k FANhyb_rscf00000683.1.g00004.1 582 KWVKQDTELFYEGIEQFGSD-FNMIAQLFP-GRTRHQIKLKFKK 623 8*****************.*****.********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	4.0E-26	573	647	No hit	No description
PROSITE profile	PS51293	11.484	578	629	IPR017884	SANT domain
SMART	SM00717	1.7E-8	579	627	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.44E-9	581	629	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-6	581	622	IPR009057	Homeodomain-like
CDD	cd00167	4.39E-7	582	623	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1194 aa Download sequence Send to blast
MDDLDFEPTG PVRVAGRFRP KAKPKSMKAA STSAASDLPN VGKENSNPVS STVSDTVPTA 60 TSVDVGVVNL TCPVGSSSEI SGSNEHLCSS IPSFDGDGIA KPSTAAGDTP QPSIVVVPSN 120 VSDGSYSVFG RSAGENADKF SGLEGLDNFH AQTTSGTEPA LTKSPDKVNE GNCSAPTHFP 180 VESSAVLACD VAEAQTVSDY CATQDPVSCT EAAMTNKHGE IRLETKEFQI LDDVSDAPFT 240 SGLRHPGKFP PKLRVKKGKN NPNIHHSEVV STTLSQAANF EVGDMDESTL CVFLPGDVHD 300 RISPTIGDSI APNPSPNFQV NAESLAETTQ LDEAVSNGAA HSEGVCGRGH DSGNGKGSTA 360 SNCPQTRKYS ASNREAKDGT SSRKSRKGLP HQEVDDLGNN TNEDSFNAEN CSDFNGNGDR 420 EHNIERRKRA PRKSKISVSE NEKPVQKRKR TKKAPDEPTE EPTEKKFSHS TRRNTRHAKK 480 ALLVIPEDEI DPQKVPLKDL IRLKEYRERV AIKEAAKLKA SASHQSAYHE FQKDPSHNEE 540 EDFGFEQDRS SGEDQAGYRD RVTTSSSSFN YQSFMNKERP SKWVKQDTEL FYEGIEQFGS 600 DFNMIAQLFP GRTRHQIKLK FKKEDRQNPL RITEAFRRHS KGHVDINHTV TYILLSDADN 660 SKYVLVINEL QKVAREKQES NADESNDLED LELTHDNDNP NIPHSGVEQS TVSPAAKFKT 720 GDVAERLADT TKLGDACFWD ATLSKGVCGK GHRSGNEKAY TVSSPPQKRK VSAADEEAKD 780 GTSSRKSRKR LPRRDVDELG NNTYEDSFNA ENCSDCDGNE DRFDHNTEHR KSALRQAKIP 840 AFENEETVRK RKRTKKAPDE PTEELTKEKS SHSTCRNIRH VDKSLVEIPE DEIDLQKVPI 900 KDIIRLNEYR IKEAAKLKTP ASNKSSIPVS STVSDTIPSA TSIDVGEVKV TCLVGLSSEI 960 LGSLEPSGNE HLWSRVQSFD GDRTTKVSES AAPHSLQPSV MVAASNGSHL AGKSADIFSG 1020 LECLDDFHTQ TTSGTVPASR KSPDKFNGQK CDAPTHCSVE SSAFLACDVA ETQTISNYYS 1080 ATKGPVSCTE ASMSNEHAEI RLETKEFETI NAVSVAPIST GCRTGKFPPK LSVKKGKENP 1140 NIPHSGVEQS TVSPAAKFKT GEMDERSVFV NSSGDVADHI SLTFGDSIAP NLTP

Sequence ? help Back to Top

Protein Sequence Length: 1194 aa Download sequence Send to blast

MDDLDFEPTG PVRVAGRFRP KAKPKSMKAA STSAASDLPN VGKENSNPVS STVSDTVPTA  60
TSVDVGVVNL TCPVGSSSEI SGSNEHLCSS IPSFDGDGIA KPSTAAGDTP QPSIVVVPSN  120
VSDGSYSVFG RSAGENADKF SGLEGLDNFH AQTTSGTEPA LTKSPDKVNE GNCSAPTHFP  180
VESSAVLACD VAEAQTVSDY CATQDPVSCT EAAMTNKHGE IRLETKEFQI LDDVSDAPFT  240
SGLRHPGKFP PKLRVKKGKN NPNIHHSEVV STTLSQAANF EVGDMDESTL CVFLPGDVHD  300
RISPTIGDSI APNPSPNFQV NAESLAETTQ LDEAVSNGAA HSEGVCGRGH DSGNGKGSTA  360
SNCPQTRKYS ASNREAKDGT SSRKSRKGLP HQEVDDLGNN TNEDSFNAEN CSDFNGNGDR  420
EHNIERRKRA PRKSKISVSE NEKPVQKRKR TKKAPDEPTE EPTEKKFSHS TRRNTRHAKK  480
ALLVIPEDEI DPQKVPLKDL IRLKEYRERV AIKEAAKLKA SASHQSAYHE FQKDPSHNEE  540
EDFGFEQDRS SGEDQAGYRD RVTTSSSSFN YQSFMNKERP SKWVKQDTEL FYEGIEQFGS  600
DFNMIAQLFP GRTRHQIKLK FKKEDRQNPL RITEAFRRHS KGHVDINHTV TYILLSDADN  660
SKYVLVINEL QKVAREKQES NADESNDLED LELTHDNDNP NIPHSGVEQS TVSPAAKFKT  720
GDVAERLADT TKLGDACFWD ATLSKGVCGK GHRSGNEKAY TVSSPPQKRK VSAADEEAKD  780
GTSSRKSRKR LPRRDVDELG NNTYEDSFNA ENCSDCDGNE DRFDHNTEHR KSALRQAKIP  840
AFENEETVRK RKRTKKAPDE PTEELTKEKS SHSTCRNIRH VDKSLVEIPE DEIDLQKVPI  900
KDIIRLNEYR IKEAAKLKTP ASNKSSIPVS STVSDTIPSA TSIDVGEVKV TCLVGLSSEI  960
LGSLEPSGNE HLWSRVQSFD GDRTTKVSES AAPHSLQPSV MVAASNGSHL AGKSADIFSG  1020
LECLDDFHTQ TTSGTVPASR KSPDKFNGQK CDAPTHCSVE SSAFLACDVA ETQTISNYYS  1080
ATKGPVSCTE ASMSNEHAEI RLETKEFETI NAVSVAPIST GCRTGKFPPK LSVKKGKENP  1140
NIPHSGVEQS TVSPAAKFKT GEMDERSVFV NSSGDVADHI SLTFGDSIAP NLTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5n9g_C	4e-11	539	662	38	161	Transcription factor TFIIIB component B'' homolog
5n9g_H	4e-11	539	662	38	161	Transcription factor TFIIIB component B'' homolog

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	848	855	RKRKRTKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292009.1	0.0	PREDICTED: transcription factor TFIIIB component B'' homolog
TrEMBL	A0A2P6PPK1	0.0	A0A2P6PPK1_ROSCH; Putative transcription factor MYB/SANT family
STRING	XP_004292009.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3666	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-36	MYB_related family protein