PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000655.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CAMTA
Protein Properties Length: 1612aa    MW: 182160 Da    PI: 8.2869
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000655.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-152.88e-176010176117
                            CG-1  76 ggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117
                                     g+v+vl+cyYah+e+n++fqrr+yw+L+++l++ivlvhy+ v
  FANhyb_rscf00000655.1.g00004.1  60 GSVDVLHCYYAHGEDNENFQRRSYWMLDTHLQHIVLVHYRMV 101
                                     689************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143720.741107IPR005559CG-1 DNA-binding domain
SMARTSM010767.4E-2118102IPR005559CG-1 DNA-binding domain
PfamPF038592.5E-135999IPR005559CG-1 DNA-binding domain
CDDcd001027.46E-5450538No hitNo description
SuperFamilySSF812969.27E-17451537IPR014756Immunoglobulin E-set
PfamPF018332.1E-5453536IPR002909IPT domain
Gene3DG3DSA:2.60.40.101.6E-5453526IPR013783Immunoglobulin-like fold
CDDcd002041.98E-13633742No hitNo description
SuperFamilySSF484031.27E-15634745IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-15637745IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.547639744IPR020683Ankyrin repeat-containing domain
SMARTSM002480.088683712IPR002110Ankyrin repeat
PROSITE profilePS500889.297683715IPR002110Ankyrin repeat
SMARTSM00248540722751IPR002110Ankyrin repeat
SMARTSM0001525801823IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.83E-7804907IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.077856878IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.59857886IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011859877IPR000048IQ motif, EF-hand binding site
SMARTSM000157.8E-4879901IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.651880904IPR000048IQ motif, EF-hand binding site
PfamPF006122.9E-4883901IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.998960988IPR000048IQ motif, EF-hand binding site
PfamPF134567.7E-615401596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1612 aa     Download sequence    Send to blast
MAEMRKYLPN QQLDLSQILR ESQQRWLRPT EICEILRNYQ RFQLTPDPPV RPPEISFVAG  60
SVDVLHCYYA HGEDNENFQR RSYWMLDTHL QHIVLVHYRM VEVMCLYVAN GKQNVPTTGN  120
KSGVSRLLVD PGSQVGSPQS ASAPCSAQAN SPAPTVQTSF ASNPIKVEWN GQKLSTEFED  180
VDSRGDAGAS SGVQPMPGSF LNACLRSPEV GIANFLRKKL FREARVDWTT PLDSIDLLKE  240
DLAFGLSESF RNPSGIWYAG PKGYESAGSS DWAMHRSTRT ECNLHEQNLF VEDIKKNIFE  300
ELNGSTHKLT DARMDGNTGA KDEIIEDRLT TNINVQPVTT PSLKEARFQG HSDPHMVPFS  360
TAQVEKSSGD AGVRSRGEPV ELKKLDSFGR WMDREIGVDC DDSLMASDSG NYWSTLEAEN  420
GDREVSSLSG HMQLDVDSLG PSLSREQLFS ICDFSPDWSY SGTESKVLIV GRFLGSKRNS  480
TDTKWGCMFG EIEVSAEVLT DNVIRCRTPL HAPGCVPFYV TCRNRLACSE VREFEYREQP  540
VGIAVNSSRE DELRFQLRLA KLLNLGSERK WLECSALDCD KCKLRSSLCS IRSSCGSDWV  600
IADGASMACK SDQLTDRDVL IQNLLKDRLF EWLVCKVHEE GKGPHVLDND GQGVLHLTAA  660
LGYEWAMGLI VAAGVSPNFR DAHGRTGLHW ASYFGREETV ITLLGLGAAP GAVEDPTPEF  720
PGGQTAADLA SSRGHKGIAG YLAEADLTSH LSLLTVNDKT LDNVSATIAA EKAIETSEAV  780
TSDVTVDDEN SLEGSLAAVR KSAHAAALIQ ATFRAHSFRQ RQLSQSSSDI SEASIDLVAL  840
GSLKRVQKFS HYEDYLHSAA ALKIQRKYRG WKGRKEFLKI RNRIVKIQAH IRGHQVRKTY  900
KKLVWSVGIM EKVILRWRRK RPGLRGFRVE KAVDASSENK RSDDYDFLSV GRKQKFAGVE  960
KALARVQSMS RHPEAREQYM RLQSKFEKLK GPCIEPCNLP WVMARYFSEI MSQSDVSGGV  1020
QRVWFPYSRA IMLNPSDSDH CPISIEVRAE KFQSWKTQRR FRFEVIWHGN PDCMEIIQIG  1080
WAEPTTAYFH QRARHGKSRN TIRGLNDEHG QWQAEPSEVR RLLMKYFQEN YIKGVGNRLK  1140
QSLSEIISYL ETAYVPGHII SDNTLVAIKA AHHSIHQLRR QETGFFSLKL DIRPMTDWNG  1200
HSYMQCSPSW DSTLLGRLVC IDHQGCPNNY IAGLKMSPQA PTLLHPFSTD DSLLFGTATE  1260
VNYQKSSVVA NVMIFTNFVL LSLEGIQMRQ KKWRIWERMR LTKQDGGMGF KNLYAYNLAM  1320
LACLQSRDGG IQWKIGNGSQ VNIWRDRCDK VLRIPISRRP CEDRLSWSLE TEGIYSLNSA  1380
YYIAREQVMQ KFMCATSNGD PYKELWKQLW KTKVPVDSRF GERRSEIGVL TTTYCLLESV  1440
CSLRVVQEKQ YASCVITTLK TWHMYYVSVP LQTNYYLSHL FSCNTLLPGI NFKEWMLERA  1500
VQLKPEMTSF KRLEGHIRQN RKPAEATFMR PIARCLIKSI SDCLKAVTEV SSPQYDLLAN  1560
GGLIDDIRGK WQRLQNVTIQ HTRRSCNAVA HRHAALGFEA ESSFYGLGKH YP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hry_A1e-1263974458157ank3C2_1
5hry_B1e-1263974458157ank3C2_1
5hry_C1e-1263974458157ank3C2_1
5hry_D1e-1263974458157ank3C2_1
5hry_E1e-1263974458157ank3C2_1
5hry_F1e-1263974458157ank3C2_1
5hry_G1e-1263974458157ank3C2_1
5hry_H1e-1263974458157ank3C2_1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464948.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
TrEMBLA0A2P6PCH30.0A0A2P6PCH3_ROSCH; Putative transcription factor CG1-CAMTA family
STRINGXP_004300026.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.21e-144signal responsive 1