PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000655.1.g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ZF-HD | ||||||||
Protein Properties | Length: 382aa MW: 42016.7 Da PI: 7.501 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.2 | 2.9e-31 | 132 | 187 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++YkeClkNhAa++Gg+a+DGCgEfmps geegt++al C+AC+CHRnFHR+e e+ FANhyb_rscf00000655.1.g00003.1 132 SIKYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALICSACNCHRNFHRKEIES 187 689*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-24 | 133 | 188 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.3E-29 | 133 | 185 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.5E-31 | 134 | 185 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.295 | 135 | 184 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.15E-18 | 308 | 370 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 308 | 370 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.9E-27 | 309 | 365 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MELSSHQEGQ IPISIPIPIP IPINSSYGAG GHGHGHMIHH HHHHEPAAPH SHTLIHNNHL 60 ITSSAPPVVA PPPPQNQIPA SINNNGSSIP TATSPDQEEQ EEEGEEHVNH VNVAYNHNHN 120 HNNNNKKVVN NSIKYKECLK NHAAAMGGTA TDGCGEFMPS GEEGTIEALI CSACNCHRNF 180 HRKEIESDHG MSSWDANNNS TRVGTVGRKV LLGHPNGHNN MSILAADALG FHTAANPTGG 240 FLPSRTAPHH PHHHPHQMIM SYNNNMSMGG LMGTHLPSES DEQEQDQIHH HGHGGGVNVA 300 SRAPVQLVKK RFRTKFTQEQ KEKMFNFAEK VGWKIQKQEE SVVQNFCHEI GVKRRVLKVW 360 MHNNKHNLAK NKSQPPPSTT TA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-22 | 310 | 367 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301574.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 3e-63 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2P6PCH9 | 0.0 | A0A2P6PCH9_ROSCH; Putative transcription factor ZF-HD family | ||||
STRING | XP_004301574.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 7e-63 | homeobox protein 31 |