PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000655.1.g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ZF-HD
Protein Properties Length: 382aa    MW: 42016.7 Da    PI: 7.501
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000655.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.22.9e-31132187359
                     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                                     +++YkeClkNhAa++Gg+a+DGCgEfmps geegt++al C+AC+CHRnFHR+e e+
  FANhyb_rscf00000655.1.g00003.1 132 SIKYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALICSACNCHRNFHRKEIES 187
                                     689*************************9.999********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-24133188IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.3E-29133185IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.5E-31134185IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.295135184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.15E-18308370IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28308370IPR009057Homeodomain-like
TIGRFAMsTIGR015658.9E-27309365IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MELSSHQEGQ IPISIPIPIP IPINSSYGAG GHGHGHMIHH HHHHEPAAPH SHTLIHNNHL  60
ITSSAPPVVA PPPPQNQIPA SINNNGSSIP TATSPDQEEQ EEEGEEHVNH VNVAYNHNHN  120
HNNNNKKVVN NSIKYKECLK NHAAAMGGTA TDGCGEFMPS GEEGTIEALI CSACNCHRNF  180
HRKEIESDHG MSSWDANNNS TRVGTVGRKV LLGHPNGHNN MSILAADALG FHTAANPTGG  240
FLPSRTAPHH PHHHPHQMIM SYNNNMSMGG LMGTHLPSES DEQEQDQIHH HGHGGGVNVA  300
SRAPVQLVKK RFRTKFTQEQ KEKMFNFAEK VGWKIQKQEE SVVQNFCHEI GVKRRVLKVW  360
MHNNKHNLAK NKSQPPPSTT TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-223103671875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301574.10.0PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9M9S03e-63ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2P6PCH90.0A0A2P6PCH9_ROSCH; Putative transcription factor ZF-HD family
STRINGXP_004301574.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.27e-63homeobox protein 31