PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000644.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 497aa    MW: 57337.6 Da    PI: 8.0681
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000644.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS468.7e-15137194258
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svs 58 
                                     ++lL++cA+ v+s d + a++lL+++++++sp+gd +qR+a+y++++L++rla   +s
  FANhyb_rscf00000644.1.g00001.1 137 QSLLTQCAKSVASYDRRTANELLKQIRQHSSPYGDGNQRVAHYLANGLEERLAAaLMS 194
                                     579*************************************************984444 PP
2GRAS154.59.8e-4819334093240
                            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                                     +s++ +N++I + +e+++r+HiiDf+i +G QWp L+q+La+Rp+gpp+lRiTg++ p+sg   +e+leetg+rLak++
  FANhyb_rscf00000644.1.g00001.1 193 MSNIYTNKTIFNLAEKATRLHIIDFGILYGYQWPGLIQSLAERPSGPPMLRITGIEFPQSGfrPSESLEETGHRLAKYC 271
                                     68899*******************************************************9****************** PP

                            GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                                     ++++vpfe+n+ +a+++e+++ ++++++++E ++Vn+  +l +l+ e+++++ +rd+vLkl+++++P+v +
  FANhyb_rscf00000644.1.g00001.1 272 KRFNVPFEYNF-IAQDWETIRHQDIKLDRDELTVVNCLCRLRNLP-EETEMNRPRDKVLKLIRRINPHVYI 340
                                     ***********.7*******************************9.77788888*************9965 PP
3GRAS60.24.3e-19344435282373
                            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                                     r++ E++l  r+i nv+aceg++r er et+++W+ r ++aGFk++p ++++ +++k +++  + + + vee+ +++v+
  FANhyb_rscf00000644.1.g00001.1 344 RRSTEAALRTRDIINVIACEGSRRLERPETYKQWQIRNTRAGFKQLPSNQEILTEVKNMVKLEYHEDFIVEEDGKWIVQ 422
                                     778899999*******************************************************999************ PP

                            GRAS 361 gWkdrpLvsvSaW 373
                                     gWk+r L +   W
  FANhyb_rscf00000644.1.g00001.1 423 GWKGRILQTYKQW 435
                                     ******9988777 PP
4GRAS35.91e-11431494311374
                            GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     t+++W+ r ++aGFk++p ++++ +++k +++  + + + vee+ +++v+gWk+r L ++S W+
  FANhyb_rscf00000644.1.g00001.1 431 TYKQWQIRNTRAGFKQLPSNQEILTEVKNMVKLEYHEDFIVEEDGKWIVQGWKGRILHAFSGWK 494
                                     789********************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.034110474IPR005202Transcription factor GRAS
PfamPF035143.4E-45193340IPR005202Transcription factor GRAS
PfamPF035141.5E-16344435IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
AKKNFVFGRN TMPTSTDQND IFTEFDQQNH EFTDPTSFLS NPNPPPCDDY SCRSFGVTAE  60
KSLEDVLIQQ YPPPTNPLLA SSIELSAENS YDFINHSSNS SSAARSWDDG SGEKGGSNGK  120
TTVRKKKDDN REVVDFQSLL TQCAKSVASY DRRTANELLK QIRQHSSPYG DGNQRVAHYL  180
ANGLEERLAA ALMSNIYTNK TIFNLAEKAT RLHIIDFGIL YGYQWPGLIQ SLAERPSGPP  240
MLRITGIEFP QSGFRPSESL EETGHRLAKY CKRFNVPFEY NFIAQDWETI RHQDIKLDRD  300
ELTVVNCLCR LRNLPEETEM NRPRDKVLKL IRRINPHVYI HGLRRSTEAA LRTRDIINVI  360
ACEGSRRLER PETYKQWQIR NTRAGFKQLP SNQEILTEVK NMVKLEYHED FIVEEDGKWI  420
VQGWKGRILQ TYKQWQIRNT RAGFKQLPSN QEILTEVKNM VKLEYHEDFI VEEDGKWIVQ  480
GWKGRILHAF SGWKPAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-251204394382Protein SCARECROW
5b3h_A1e-251204393381Protein SCARECROW
5b3h_D1e-251204393381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461323.11e-172PREDICTED: scarecrow-like protein 11
SwissprotQ9LTI51e-106SCL11_ARATH; Scarecrow-like protein 11
SwissprotQ9XE581e-105SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM5W3911e-150M5W391_PRUPE; Uncharacterized protein
STRINGXP_004295970.11e-155(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.11e-108GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]