PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000613.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family BBR-BPC
Protein Properties Length: 310aa    MW: 34964.5 Da    PI: 10.1177
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000613.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind366.45.3e-11213101301
                       GAGA_bind   1 mdddgsre.rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflq 62 
                                     mdd  +++ r+k+ yy+              ++ ++l   +++++ms+iaerda+ir+rn+a+sek++a+a+rd+a+ q
  FANhyb_rscf00000613.1.g00003.1   1 MDDGRHENgRHKPdYYRgapspwnmtaqqqvKEpNALV--MNKKIMSIIAERDAAIRDRNAAISEKNEALAARDEALRQ 77 
                                     899999999****9999********9987663345666..99************************************* PP

                       GAGA_bind  63 rdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaa 141
                                     rd+a+++r+ al+erdn+++a   ++ns++   p + ++ +g+k ++   + +  +++d ++ +++  ++ea+pi+   
  FANhyb_rscf00000613.1.g00003.1  78 RDEAFSQRDTALMERDNAFAAFHIRDNSMN--FPLSGGAQRGSKRMHYPSH-HPVNMADGPYSTKDVPITEAFPISVLS 153
                                     ************************999965..5778888999999995554.779**********************99 PP

                       GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalr 220
                                      ea +++++k+++++k  +++k ++kk  +e+ +++ ++++   + ++e++++dl+ln vs+De+t+PvPvCsCtG++r
  FANhyb_rscf00000613.1.g00003.1 154 AEAIKSRQTKRSKQNKASRASKPSRKKV-GEDLNRQASTDG--IKYRSEWDTQDLGLNLVSFDETTMPVPVCSCTGMPR 229
                                     9999999999888888888887777666.667777777777..569********************************* PP

                       GAGA_bind 221 qCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvt 299
                                     qCYkWGnGGWqS+CCtt++S+yPLP+++++r+aR++grKmS+++f++lL++LaaeG+dls p+DLk++WA+HGtn+++t
  FANhyb_rscf00000613.1.g00003.1 230 QCYKWGNGGWQSSCCTTNMSMYPLPQMPNKRHARMGGRKMSGSVFTRLLSRLAAEGHDLSVPLDLKEYWARHGTNRYIT 308
                                     ******************************************************************************* PP

                       GAGA_bind 300 ir 301
                                     i+
  FANhyb_rscf00000613.1.g00003.1 309 IK 310
                                     *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.3E-1471310IPR010409GAGA-binding transcriptional activator
PfamPF062179.7E-1011310IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDDGRHENGR HKPDYYRGAP SPWNMTAQQQ VKEPNALVMN KKIMSIIAER DAAIRDRNAA  60
ISEKNEALAA RDEALRQRDE AFSQRDTALM ERDNAFAAFH IRDNSMNFPL SGGAQRGSKR  120
MHYPSHHPVN MADGPYSTKD VPITEAFPIS VLSAEAIKSR QTKRSKQNKA SRASKPSRKK  180
VGEDLNRQAS TDGIKYRSEW DTQDLGLNLV SFDETTMPVP VCSCTGMPRQ CYKWGNGGWQ  240
SSCCTTNMSM YPLPQMPNKR HARMGGRKMS GSVFTRLLSR LAAEGHDLSV PLDLKEYWAR  300
HGTNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290338.10.0PREDICTED: protein BASIC PENTACYSTEINE4
RefseqXP_011458302.10.0PREDICTED: protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-135BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A2P6PQ670.0A0A2P6PQ67_ROSCH; Putative transcription factor GAGA-Binding-like family
STRINGXP_004290338.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-124basic pentacysteine 4