PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000598.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 811aa    MW: 90809 Da    PI: 5.2043
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000598.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.93e-26130231199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f k+ltpsd++++g +++pk++aee+       ++++ +  +lt +d++g +W +++iyr++++r++lt+GW+ Fv a+
  FANhyb_rscf00000598.1.g00004.1 130 FSKILTPSDTSTHGGFSVPKRHAEECfppldlfQQPPVQ--ELTAKDLHGVQWHFRHIYRGQPKRHLLTSGWSTFVTAK 206
                                     88*****************************97666666..8************************************* PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L  gD ++F   + +++el+v+++r+
  FANhyb_rscf00000598.1.g00004.1 207 KLVPGDACIFV--RGENGELRVGIRRA 231
                                     ***********..449999******97 PP
2Auxin_resp97.81.5e-32256337182
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 
                                     a ha+st+++F+v+Y+P++s++ F++++++++k+ + ++s+GmRfkm fe+e+ +e+r+ Gt+++++d d++rWp S+W
  FANhyb_rscf00000598.1.g00004.1 256 AFHAISTGTMFTVYYRPWTSPAPFIIPYDQYMKSAQYEYSIGMRFKMWFEGEEGAEKRCEGTIIDINDKDSIRWPSSEW 334
                                     689**************************************************************************** PP

                      Auxin_resp  80 rsL 82 
                                       L
  FANhyb_rscf00000598.1.g00004.1 335 GRL 337
                                     776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-40123243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-36125258IPR015300DNA-binding pseudobarrel domain
CDDcd100173.64E-25129230No hitNo description
PfamPF023624.7E-24130231IPR003340B3 DNA binding domain
SMARTSM010199.2E-26130232IPR003340B3 DNA binding domain
PROSITE profilePS5086313.479130232IPR003340B3 DNA binding domain
PfamPF065071.4E-29256338IPR010525Auxin response factor
PROSITE profilePS5174518.862544626IPR000270PB1 domain
SuperFamilySSF542771.37E-8550621No hitNo description
PfamPF023091.9E-7552623IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MASSVIGEQQ SAYPVNNRQG GKDDLDTQLW HTCAGSNIYV PRPGDKVFYI AQGHIEQVEA  60
YADTDSNSAM PKYNLPPKIL CHVVNVQLKA EVHTDEVFAQ ITLLPVTEQD QLSLEDENAP  120
SLPHRTRTYF SKILTPSDTS THGGFSVPKR HAEECFPPLD LFQQPPVQEL TAKDLHGVQW  180
HFRHIYRGQP KRHLLTSGWS TFVTAKKLVP GDACIFVRGE NGELRVGIRR ATKTQDNATA  240
SLISGNSMQH GILACAFHAI STGTMFTVYY RPWTSPAPFI IPYDQYMKSA QYEYSIGMRF  300
KMWFEGEEGA EKRCEGTIID INDKDSIRWP SSEWGRLKVQ WDATSDTILH SERLSPWNIK  360
PAESSNKKRT SFPRPHHKRL RIPDPSSPMF SGLARNGPFP SIMPQRQEVF QGQEISEIHA  420
YDLDAPMHDP LHQSPRSSIA FSCENMMTPG NTNQWPPQFT PFGVVGSEPF SRSMSVPNIN  480
SSGSEELSAS KQRSKTQGPF VPPNTLMLFG VNLDNSHSEL PSPQVANSTG LLSPCSIPPI  540
SQSSVSETVL KHGAALGRSV DLTRFDGYGE LVSELDQMFD FEGRLIDGSS GWQITYMDDE  600
GDMMLIGDYL WHEFLSMVRK MFICPKDQEV DNLIPGVTSQ INKSVYSVED AFVLQGNKFQ  660
IKAEAETFSV AANCHKIVLF QSQTALRSQS ASNPETQVDE EEDPDAQVQD LSVPEHYLVP  720
SKALEESEWL RVTLHKWLDD EYCPEPTNVE ISKIAAQSYY KALLEKQTDL GEILLKMAME  780
LESISYQESF HGAFSSANAA VSLIAQRIEQ A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1272336417357Auxin response factor 1
4ldw_A1e-1272336417357Auxin response factor 1
4ldw_B1e-1272336417357Auxin response factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458664.10.0PREDICTED: auxin response factor 23-like isoform X2
TrEMBLA0A2P6PWE40.0A0A2P6PWE4_ROSCH; Auxin response factor
STRINGXP_004292624.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.31e-153auxin response factor 1