PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000585.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TCP | ||||||||
Protein Properties | Length: 531aa MW: 57534.4 Da PI: 10.1545 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.2 | 3.6e-35 | 147 | 250 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssss 69 a+g+kdrhsk++T++g RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l ++ ++s+ FANhyb_rscf00000585.1.g00001.1 147 ATGRKDRHSKVCTAKGTRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDKLDELppwnpnsisvQTSA 225 589**************************************************************77666655542222 PP TCP 70 aseceaesssssasnsssg.....k 89 + + + s ++++n+s + FANhyb_rscf00000585.1.g00001.1 226 SPTVPPTSTAQETQNNSTLhfsmvE 250 2222222222222222111222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.9E-29 | 148 | 275 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.941 | 150 | 208 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MAEPFAIRFQ KSHSTSSSGS SSSVKALGKS RAGSVEIHKP SKQKSSLVVA KNNSDRSSTS 60 SASASSSSGA AVTTVPLKAG KGNSQVLDSG SSRQPLPFPV PSFFYFNRRT HHRICSKKNG 120 GAEPQQPSPP PPPRHRLVLL RCCSTGATGR KDRHSKVCTA KGTRDRRVRL AAHTAIQFYD 180 VQDRLGYDRP SKAVDWLIKK AKAAIDKLDE LPPWNPNSIS VQTSASPTVP PTSTAQETQN 240 NSTLHFSMVE APSSLSANRR ASMVGSGVAE LVNQNSSNFL PPSMDSDSIA DTIKSFFPMG 300 AATTAETPSF HPSYPPDLLS RTSSQSQDLR LSLHSFQDPI LLHHHQAHQH QTHHQNEQTF 360 LTPNPLGFDS SAATWTEQHH QQQQQAELNR FQRMLAWSNA GGGDSNNNNN SGGGGGGFTF 420 NSLPLSQSQS PTLQPFLFGQ NQFFSSQRGP LQSSNAPSVH AWIDHNDLSD HQHQMAPSMH 480 NHHHHQQSSI SGMGFASGVF PGFHIPARIQ GEEEHDGISD KPSSASSNSR H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-21 | 155 | 208 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-21 | 155 | 208 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294116.1 | 0.0 | PREDICTED: transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 6e-94 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2P6QA82 | 0.0 | A0A2P6QA82_ROSCH; Putative transcription factor TCP family | ||||
STRING | XP_004294116.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-77 | TCP family protein |