PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000518.1.g00003.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 424aa MW: 46765.7 Da PI: 7.3952

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000518.1.g00003.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.2	4.9e-30	141	191	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQ FANhyb_rscf00000518.1.g00003.1 141 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQ 191 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.521	138	198	IPR017930	Myb domain
SuperFamily	SSF46689	1.34E-14	139	191	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.6E-28	140	191	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-22	141	191	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	143	191	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-9	244	271	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MLSLESATAS LIWGEVEAHG MTRYGSNVIH TGHSSYRLSP NMNMRVPYLD LTNSIIYDGY 60 CRSIGALGMS LLVKVCLWYA FGESENLMKL ELNNSVKHPH PASFVLISIT HNVFFVFYCR 120 PNTMDNINGA NSPSNSNLTS KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG 180 LTIYHVKSHL QWNANYGSIK AANGATNKTA SVDRMNLQTS IRAEPTSRSP PTTFQLTVNA 240 NLQRVGVQRQ LQLRIEAQGK YLKKIIEEQQ RLSGVLSEAP GPGNTLASGD TCRESDKVDP 300 ATPAPTSECP IQDKAIKERA PAKSLSIDES CSSRHDEPST PDSGCHVISP AESPDAERLL 360 KKQRFSMGEA FSNPEVVLTH QILESSLNSY QQAHTIFVPR EQSNPTSDYS IRNVDLEQVA 420 GSDM

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MLSLESATAS LIWGEVEAHG MTRYGSNVIH TGHSSYRLSP NMNMRVPYLD LTNSIIYDGY  60
CRSIGALGMS LLVKVCLWYA FGESENLMKL ELNNSVKHPH PASFVLISIT HNVFFVFYCR  120
PNTMDNINGA NSPSNSNLTS KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG  180
LTIYHVKSHL QWNANYGSIK AANGATNKTA SVDRMNLQTS IRAEPTSRSP PTTFQLTVNA  240
NLQRVGVQRQ LQLRIEAQGK YLKKIIEEQQ RLSGVLSEAP GPGNTLASGD TCRESDKVDP  300
ATPAPTSECP IQDKAIKERA PAKSLSIDES CSSRHDEPST PDSGCHVISP AESPDAERLL  360
KKQRFSMGEA FSNPEVVLTH QILESSLNSY QQAHTIFVPR EQSNPTSDYS IRNVDLEQVA  420
GSDM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	141	191	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	141	191	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	141	191	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	141	191	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	141	191	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	141	191	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	141	191	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	141	191	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	141	191	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	141	191	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	141	191	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	141	191	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293430.1	1e-174	PREDICTED: uncharacterized protein LOC101309129
Swissprot	Q9SJW0	2e-85	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	F2QKX7	1e-162	F2QKX7_ROSHC; Putative MYB transcription factor
STRING	XP_004293429.1	1e-177	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	5e-79	G2-like family protein