PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000511.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YA
Protein Properties Length: 366aa    MW: 40172.3 Da    PI: 7.9193
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000511.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1025.5e-32195251158
                       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                     +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  FANhyb_rscf00000511.1.g00001.1 195 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHRHAMRRARGTGGRF 251
                                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.5E-35193254IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.866194254IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.8E-28196251IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.0E-24197219IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860199219IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.0E-24228251IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAKCPYVAYL VSPICNDLEY CFLSTGMQPK SETENRIRVD HHTIPPSTVS SEPWWRTGYN  60
PTSPTVTGRN VSTSSSFEPP KSHSESSDDK SVSDDGSNED DDNAKESHLT SPLSVGNKNQ  120
DLQLDSSTVP TVHDEGVTHP PQLELIGHSI ACASNPYQDP YYAGMMAAYG HQPLGYPPFV  180
GMPHARMPLP LEMAQEPVYV NAKQYQGILR RRQARAKAEL EKKLIKVRKP YLHESRHRHA  240
MRRARGTGGR FAKKTNGDTL KTGGQEKASH SSQSASSSGS EPLPSDSAET WNSSISQQEA  300
SRPQVHDAYA TNNYVNGSGC YQTHGGLQAS LYRTYSGKRG DEGDCMGQQR GSISSNQGSQ  360
RRLAIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19195259266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235244RHRHAMRRAR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291784.10.0PREDICTED: nuclear transcription factor Y subunit A-1
RefseqXP_011459505.10.0PREDICTED: nuclear transcription factor Y subunit A-1
SwissprotQ945M98e-80NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A2P6QFL80.0A0A2P6QFL8_ROSCH; Putative transcription factor Hap2/NF-YA family
STRINGXP_004291783.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-76nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]