PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000501.1.g00006.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 368aa MW: 38971.9 Da PI: 9.0614

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000501.1.g00006.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	3.9e-39	79	138	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e alkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+ss FANhyb_rscf00000501.1.g00006.1 79 EPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSS 138 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-29	66	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-32	81	136	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.674	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MFLFNCSNQV HHHHHHHLLS GSNSNNNINN NSQLHPLPPP PPPPPSNPNG GGSGPGGAGS 60 IRPGSMADRA RMANIPMPEP ALKCPRCDST NTKFCYFNNY SLTQPRHFCK TCRRYWTRGG 120 ALRNVPVGGG CRRNKRSSKG GSSQSKSPVS SSDRPTGSAS SSGQAIPSNS SAGTVDMMAA 180 GLSPQIPPLR FINPFTDHHF SPSENLGMNY GLSYGGGVGD LGFQLGSGLG GGITSTPSGS 240 LFEQQWRFQQ QTPSFPFLSE GLDYAPGLFE GSGVEFLGYN TVRPRLLSSG SSVGVSSQMA 300 SVKTEDPHNQ NHQQQEINLS RQLLGIQGGN DSQYWINGAG GNANGTSTTA WTDLSGFSST 360 STATNHPL

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MFLFNCSNQV HHHHHHHLLS GSNSNNNINN NSQLHPLPPP PPPPPSNPNG GGSGPGGAGS  60
IRPGSMADRA RMANIPMPEP ALKCPRCDST NTKFCYFNNY SLTQPRHFCK TCRRYWTRGG  120
ALRNVPVGGG CRRNKRSSKG GSSQSKSPVS SSDRPTGSAS SSGQAIPSNS SAGTVDMMAA  180
GLSPQIPPLR FINPFTDHHF SPSENLGMNY GLSYGGGVGD LGFQLGSGLG GGITSTPSGS  240
LFEQQWRFQQ QTPSFPFLSE GLDYAPGLFE GSGVEFLGYN TVRPRLLSSG SSVGVSSQMA  300
SVKTEDPHNQ NHQQQEINLS RQLLGIQGGN DSQYWINGAG GNANGTSTTA WTDLSGFSST  360
STATNHPL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00483	DAP	Transfer from AT5G02460	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004302761.1	0.0	PREDICTED: dof zinc finger protein DOF2.4
TrEMBL	A0A2P6RA37	1e-163	A0A2P6RA37_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004302761.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	4e-36	DNA binding with one finger 2.4