PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000452.1.g00006.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HD-ZIP

Protein Properties

Length: 865aa MW: 94066.6 Da PI: 6.4714

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000452.1.g00006.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.4e-21	111	166	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k FANhyb_rscf00000452.1.g00006.1 111 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMK 166 688999***********************************************999 PP
2	START	206.7	9.3e-65	315	537	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS START 1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqW 72 ela++a++elvk+a+ +ep+W+++ e +n +e++++f++ + + +ea+r++g+v+ ++ lve+l+d++ +W FANhyb_rscf00000452.1.g00006.1 315 ELALAAMDELVKLAQTDEPLWSLEGgrEVLNHEEYMRSFTPCIGlkpngFVTEASRETGMVIINSLALVETLMDSN-RW 392 5899******************999*********999899999***********************. PP -TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-T CS START 73 detla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppess 140 e+++ + +t++vissg galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd ++++ + FANhyb_rscf00000452.1.g00006.1 393 LEMFPcmiaRTSTTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDTIRDNSGAP 471 **************************************************************************9 PP TSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 141 svvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++ +++lpSg+++++++ng+skvtwveh++++++++h l+r+l++sg+ +ga++wvatlqrqc++ FANhyb_rscf00000452.1.g00006.1 472 TFANCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHHLYRPLLSSGMGFGAQRWVATLQRQCQC 537 ****************************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.3E-21	97	168	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-22	97	168	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.058	108	168	IPR001356	Homeobox domain
SMART	SM00389	3.6E-19	109	172	IPR001356	Homeobox domain
CDD	cd00086	1.29E-19	111	168	No hit	No description
Pfam	PF00046	8.6E-19	111	166	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	143	166	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.593	306	540	IPR002913	START domain
SuperFamily	SSF55961	3.3E-33	310	537	No hit	No description
CDD	cd08875	4.29E-124	312	536	No hit	No description
SMART	SM00234	8.3E-48	315	537	IPR002913	START domain
Pfam	PF01852	5.5E-57	315	537	IPR002913	START domain
SuperFamily	SSF55961	2.51E-18	558	669	No hit	No description
SuperFamily	SSF55961	2.51E-18	723	792	No hit	No description
SuperFamily	SSF55961	2.51E-18	819	851	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009827	Biological Process	plant-type cell wall modification
GO:0042335	Biological Process	cuticle development
GO:0043481	Biological Process	anthocyanin accumulation in tissues in response to UV light
GO:0048765	Biological Process	root hair cell differentiation
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence Send to blast
MSFGGFLDNS TGSSGGARIV ADIPYNHHPH HNANHTSMPS SAIAQPRLQT NADGGGDAAR 60 MAENFEGNNN VGGRRSREEE NEISRSGSDN MDGAGSGDEG DAADNSNPRK KKRYHRHTPQ 120 QIQELEALFK ECPHPDEKQR LELSRRLNLE TRQVKFWFQN RRTQMKTQLE RHENSLLRQE 180 NDKLRAENMS IRDAMRNPIC TNCGGPAMIG DISIEEQHLR IDNARLKDEL DRVCALAGKF 240 LGRPISSLGP SMGPPLPSSA LELGVGNNGF GGMSSVSTTM PLGPDFGAGL GGGMPLVAHT 300 RPVAGGLDER TMFLELALAA MDELVKLAQT DEPLWSLEGG REVLNHEEYM RSFTPCIGLK 360 PNGFVTEASR ETGMVIINSL ALVETLMDSN RWLEMFPCMI ARTSTTDVIS SGMGGTRNGA 420 LQLMHAELQV LSPLVPVREV NFLRFCKQHA EGVWAVVDVS VDTIRDNSGA PTFANCRRLP 480 SGCVVQDMPN GYSKVTWVEH AEYDESQVHH LYRPLLSSGM GFGAQRWVAT LQRQCQCLAI 540 LMSSTVPARD HANTITQSGR KSMLKLAQRM TDNFCAGVCA STVHKWNKLN AGNVDEDVRY 600 MTRESMDDPG EPPGIVLSAA TSVWLPVSPQ RLFNFLRDER LRSEWDILSN GGPMQEMAHI 660 AKGQDQGNCV SLLRARVSFL NFLSLNYLVQ YDACVPGRES EVKMAKRDGV FVWLCVGIMG 720 KVKVKWGEKG QAMNANQNSM LILQETCIDA AGSLVVYAPV DIPAMHVVMN GGDSAYVALL 780 PSGFAIVPDG PGSRGPGGAE GKAGQGGSNG NGGEARVSGS LLTMTFQILV NSLPSAKLTV 840 ESVETVNNLI SCTVQKIKGA LQCES

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence Send to blast

MSFGGFLDNS TGSSGGARIV ADIPYNHHPH HNANHTSMPS SAIAQPRLQT NADGGGDAAR  60
MAENFEGNNN VGGRRSREEE NEISRSGSDN MDGAGSGDEG DAADNSNPRK KKRYHRHTPQ  120
QIQELEALFK ECPHPDEKQR LELSRRLNLE TRQVKFWFQN RRTQMKTQLE RHENSLLRQE  180
NDKLRAENMS IRDAMRNPIC TNCGGPAMIG DISIEEQHLR IDNARLKDEL DRVCALAGKF  240
LGRPISSLGP SMGPPLPSSA LELGVGNNGF GGMSSVSTTM PLGPDFGAGL GGGMPLVAHT  300
RPVAGGLDER TMFLELALAA MDELVKLAQT DEPLWSLEGG REVLNHEEYM RSFTPCIGLK  360
PNGFVTEASR ETGMVIINSL ALVETLMDSN RWLEMFPCMI ARTSTTDVIS SGMGGTRNGA  420
LQLMHAELQV LSPLVPVREV NFLRFCKQHA EGVWAVVDVS VDTIRDNSGA PTFANCRRLP  480
SGCVVQDMPN GYSKVTWVEH AEYDESQVHH LYRPLLSSGM GFGAQRWVAT LQRQCQCLAI  540
LMSSTVPARD HANTITQSGR KSMLKLAQRM TDNFCAGVCA STVHKWNKLN AGNVDEDVRY  600
MTRESMDDPG EPPGIVLSAA TSVWLPVSPQ RLFNFLRDER LRSEWDILSN GGPMQEMAHI  660
AKGQDQGNCV SLLRARVSFL NFLSLNYLVQ YDACVPGRES EVKMAKRDGV FVWLCVGIMG  720
KVKVKWGEKG QAMNANQNSM LILQETCIDA AGSLVVYAPV DIPAMHVVMN GGDSAYVALL  780
PSGFAIVPDG PGSRGPGGAE GKAGQGGSNG NGGEARVSGS LLTMTFQILV NSLPSAKLTV  840
ESVETVNNLI SCTVQKIKGA LQCES

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00421	DAP	Transfer from AT4G00730	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004306832.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2P6SGK8	0.0	A0A2P6SGK8_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family
STRING	XP_004306832.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]