PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000448.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 427aa    MW: 45868 Da    PI: 9.0357
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000448.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.54.6e-21285347163
                                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                     e+elkrerrkq+NRe+ArrsR+RK+ae++eL++kv++L a N++Lk+e+++l + +++l+ e+
  FANhyb_rscf00000448.1.g00001.1 285 ERELKRERRKQSNRESARRSRLRKQAETDELARKVEALNADNESLKSEINRLAESSDRLRVEN 347
                                     89********************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-321100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.1E-18131263No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-15279344No hitNo description
PfamPF001701.8E-18285347IPR004827Basic-leucine zipper domain
SMARTSM003383.2E-20285349IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.265287350IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.13E-10288343No hitNo description
CDDcd147029.95E-19290338No hitNo description
PROSITE patternPS000360292307IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGNDDEVKSV KTEQSSSPLT ADPKNHTSQT NIHVYPDWAA MQAYYGPRVP MPPYYNSPAA  60
SGHAPHPYMW GPPQTMMSPY GAPYAAIYSH GSVYAHPAVP LGSNGQGVPL SPAAANPSSV  120
ETPTKSSGNN DRGLVKRSKG FDALEMSIGN GNVENAEGEA DQSLSKSSAT EGSSSDGNTS  180
RANQSRRKRT REGTPTTVVA IAGDQKPEMQ ASPASAKDVN AASNKVLGTT VAAVGVPAKL  240
VRPAVSPGMT TVLELKNPSS LNLASATSVQ QPSAVLPPET WLQNERELKR ERRKQSNRES  300
ARRSRLRKQA ETDELARKVE ALNADNESLK SEINRLAESS DRLRVENASL MEKLKKARVG  360
RMEEIIMNIE DNRVEAISTE NLLSRVNNSG ALARDVEEEG SMYEKKAAAK LHQLLDASPR  420
TDAIAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301307RRSRLRK
2301308RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306702.10.0PREDICTED: common plant regulatory factor 1-like
SwissprotQ990891e-137CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A2P6SI570.0A0A2P6SI57_ROSCH; Putative transcription factor bZIP family
STRINGXP_004306702.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-118G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]