PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000415.1.g00010.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 987aa    MW: 108056 Da    PI: 4.3291
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000415.1.g00010.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.31.4e-116226511645
                                     HHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                          SRF-TF  16 RrngilKKAeELSvLCdaevaviifsstgk 45 
                                     R  +++KK eEL +LCda+vav+i++s+g 
  FANhyb_rscf00000415.1.g00010.1 622 RTLTLFKKGEELATLCDAQVAVLIYGSNGS 651
                                     7779************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.559.101.8E-51753IPR023213Chloramphenicol acetyltransferase-like domain
Gene3DG3DSA:3.10.450.502.8E-3660185IPR032710NTF2-like domain
CDDcd007802.56E-4062184IPR018222Nuclear transport factor 2, eukaryote
SuperFamilySSF544271.75E-3662183IPR032710NTF2-like domain
PROSITE profilePS5017732.6966182IPR018222Nuclear transport factor 2, eukaryote
PfamPF021363.6E-2866182IPR002075Nuclear transport factor 2
Gene3DG3DSA:3.30.70.3302.1E-12329431IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549282.82E-14350460IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010211.98353432IPR000504RNA recognition motif domain
SMARTSM003605.9E-10354426IPR000504RNA recognition motif domain
CDDcd005901.28E-10355413No hitNo description
PfamPF000761.7E-10355413IPR000504RNA recognition motif domain
PROSITE profilePS5006610.26608659IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-4609658IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-8612663IPR002100Transcription factor, MADS-box
PfamPF003194.0E-8622652IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006810Biological Processtransport
GO:0005622Cellular Componentintracellular
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MAATGSELLI RVSICQNKRE KIGIAGSDRI GMYQTDFGWG SPSKVEPWRM ALQTVIPPAI  60
PSAQVVANAF IAQYYHILHH NPDNVYRFYQ DSSVMSRPDA DGVMRSVTTM QGINDQILSF  120
DYKEYKAEIE TADAQISYKD GVTVLVTGCL TSKDNLKRKF AQSFFLAPQE NGFFVLNDVF  180
RYVEDGELLK NHSVNGVNDA TSVLLNQEPE PTYVPDPPVP DLETAPVEED QNVVEKAFDT  240
SDQDRQSANE KESGIESPSY SNGGNAPVVV ESASTTAQED GQKKSYASIV KVAKGSPGPN  300
KVYVPTNTVK FAPKKMENSL PGSAASASVP EASAPASSTT IENRETNEEA EGYSIYISNL  360
PLSVTADQLE VEFKKFGPIK EGGIQVRNKK LQGYCFGFVE FQSLSSMNSA IQASPITIGG  420
LQATIEIKKT NTRTALFLSM IPVFPVGNSG SGSFSSGRGG FRSDSFRGHG VELDVAEMVI  480
DKGEEVVINK GEERDINNSE ERVITKEEET VINMREKFIN QEETVISKGE EEEVAIQVDQ  540
SRMWFQHEVR KLGFSFDNFV AVLGMMYHVQ KVQSPPRSAT QLEQVTKPKL AGKVMKQKIN  600
PKPKLAGKVM KQKINQKAID GRTLTLFKKG EELATLCDAQ VAVLIYGSNG SIIQSMKNKV  660
ADTTGEELHQ NPCFEGLGEE FELRDEEFEK LTQDSLMGLS GFFESKVQNS DETINLIEGS  720
SQPMEGSTID HPENSSNCNP PIELAENIWD IPMSEDFDKG QTLLTDSLDS GGIETSTSNS  780
LVYQDTPYGI GNSTISNEEL GCLQASGDFE NYSSNFGTDL WTSTSSSLDY QNTYYPDFPT  840
VIPDSSSSTN LEQLGHDRGM LQANGDSSTS FSSGSSDEVW INNNGSLEDF ERWLNDETMT  900
GSEEHQSCAS AASISGYSTP TSCQSGRLWT DSLGLEAAAN NVSNFVNGHD QQGMVAPKPS  960
PLEEVLMTAL QPKHLELQNP PELIIID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5drv_A3e-17611859139Ras GTPase-activating protein-binding protein 2