PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000386.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 464aa    MW: 50728 Da    PI: 9.6685
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000386.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-056688123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    + C++C+k F r  nL+ H r H
  FANhyb_rscf00000386.1.g00001.1 66 FICEICNKGFQRDQNLQLHRRGH 88
                                    89*******************88 PP
2zf-C2H212.90.00034143165123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     +kC++C+k +  +s+ k H +t+
  FANhyb_rscf00000386.1.g00001.1 143 WKCEKCSKKYAVQSDWKAHSKTC 165
                                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.74E-76588No hitNo description
PfamPF121715.5E-56688IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355100108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.74E-7138163No hitNo description
SMARTSM00355140143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MMSGDGYSLM PSAIEGFDHQ LNPANPSQNQ KSNPAVKKKR NLPGTPDPDA EVIALSPTTL  60
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTNK DVIKKKVYIC PEKTCVHHDP  120
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY KCDCGTLFSR  180
KDSFITHRAF CDALTEESAR LTSAAAAATN LNFGNDPSAY NTMMNSQAVQ DVSQISDFEK  240
PSRLSFWMNQ QPNNLNVMDM AEANPNNLYD MVQMGSDTSL FGSNSMSNFG ASTSISSANL  300
SLSSPMGLKD QEGRNIKPNI ISKPPSAPMS ATALLQKAAQ LGSTRSSNQP LPGSSAGVMT  360
SPPSSNTLNF NRGSNELNQL FQPRNTTSSN LVSSLSCASN NTSLEQLMKF GGASSNAIDR  420
QNSLTRDFLG VGGDSQAHNR QFLPHELAKF GSSAMGLSPF TGNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-39139203367Zinc finger protein JACKDAW
5b3h_F4e-39139203367Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304416.10.0PREDICTED: zinc finger protein JACKDAW
TrEMBLA0A2P6RAR60.0A0A2P6RAR6_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004304416.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-100C2H2-like zinc finger protein