PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000373.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 1895aa    MW: 209372 Da    PI: 5.7646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000373.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.4e-06398425127
                                     --S---SGGGGTS.--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHgp 27 
                                     +kt+lC+ff+r    C +G+ C++aH++
  FANhyb_rscf00000373.1.g00002.1 398 WKTSLCSFFRRQDaSCGHGAGCRYAHSE 425
                                     8**********66*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.3E-11299355IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139209.7E-15309355No hitNo description
SuperFamilySSF578508.08E-12310356No hitNo description
CDDcd001623.00E-8310353No hitNo description
PROSITE profilePS5008911.147311350IPR001841Zinc finger, RING-type
SMARTSM001845.0E-4311349IPR001841Zinc finger, RING-type
Gene3DG3DSA:4.10.1000.101.2E-10394431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5395430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.911397426IPR000571Zinc finger, CCCH-type
CDDcd005900.00204493536No hitNo description
PROSITE profilePS5168744.7145841202IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533353.26E-41586612IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.26E-41644740IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.26E-41814938IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1508.1E-42835947IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138478.0E-9882944IPR025714Methyltransferase domain
CDDcd024402.63E-6884964No hitNo description
SuperFamilySSF533353.26E-419781001IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1508.1E-429791004IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.4E-2210931141IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059582.5E-710941137IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS01230010971129IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.4E-2211761201IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE profilePS5092718.83412541374IPR001480Bulb-type lectin domain
Gene3DG3DSA:2.90.10.102.5E-2512551391IPR001480Bulb-type lectin domain
CDDcd000281.49E-3212601385No hitNo description
SMARTSM001081.3E-3012601385IPR001480Bulb-type lectin domain
SuperFamilySSF511102.75E-2313021416IPR001480Bulb-type lectin domain
PfamPF014533.1E-2913021412IPR001480Bulb-type lectin domain
PfamPF009541.5E-2514431552IPR000858S-locus glycoprotein domain
CDDcd010983.48E-1815711658No hitNo description
PfamPF082762.8E-1815751642IPR003609PAN/Apple domain
PROSITE profilePS509489.51915751658IPR003609PAN/Apple domain
SMARTSM004735.3E-415761657IPR003609PAN/Apple domain
Gene3DG3DSA:2.60.120.2003.1E-1116611743IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561121.48E-5517121895IPR011009Protein kinase-like domain
PROSITE profilePS5001131.35417301895IPR000719Protein kinase domain
SMARTSM002203.6E-817301893IPR000719Protein kinase domain
PfamPF000695.4E-3317331889IPR000719Protein kinase domain
Gene3DG3DSA:3.30.200.204.2E-2617441794No hitNo description
Gene3DG3DSA:1.10.510.107.1E-2517951895No hitNo description
PROSITE patternPS00108018511863IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0006468Biological Processprotein phosphorylation
GO:0048544Biological Processrecognition of pollen
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1895 aa     Download sequence    Send to blast
MGIGSSSAGR RRHRPPPHPA IPQPQNGGGR YPYPGASPPY PPQYPNEPIP NPGQFHQYPT  60
GPNPSHAQFY HYSAFYPPPP VPGAYHRGGA FMGPPPPPGN WVPGQYPCGA PPPLPGAPFV  120
EHQKTVTIKN DVNIKKDSLR VEPDEENPGK FVVAFTFDAA APGSITVMFF AKEDADFNLI  180
ATKESLLSPV KVPFDKGLGQ KFRQPCGTGI DFSLFEEIGL TKEEDAEVYP LVVKAEAHTT  240
NDGERESDGN SAGNSQITQA VFEKKENGEY KVRVMKQILW VDNMRYELQE IYGIGNAVEG  300
EQNDNEAGKE CIICLSEPRD TTVLPCRHMC MCSGCAKVLR FQTNRCPVCR QPVERLLEIK  360
VNNAADGALD DAVSGDKRKR DVEEEEGGDN KKKQHPLWKT SLCSFFRRQD ASCGHGAGCR  420
YAHSEAELRP RPDNTWDPTS ERAKKAAQKS CEEEKECAAI DDVMMTEALE DDDEDGEGDG  480
FGSDPALSKC LGIQYKSAKK KKGMALGFMS FESAEQLETA VKALDGISIG NNNIKVADVL  540
PRSFEKKTKS ALGLPLIGES GEDSMVANGV EDGDGMKGRS ARTVVTPLAH MPYADQLEQK  600
KSSVTQILKK LTRNARKACP NGVPLPEWIL KSREIGGLPC ILEGILASPV VNGYRNKCEF  660
SVGHSLQGKV TVGFMLGNFR EGVTAVEEPL DCPNVSAISC KFASIFQEFL QQSSLPVWNR  720
FKNNGFWRQL TVREGRSGSV SDAENCELNI SEILLMVQVS TAGLDNSLVT SEFERLAQAF  780
SAGATENSPS LPLTALVIQD HQGISNVAPA DAPLHSLCIS KAENGSEIQA TNNMTEPKIH  840
DYISDLRFCI SPTAFFQVNT LAAEKLYSLA GDWAELGPDT LLFDVCCGTG TIGLTLAHRV  900
GMVVGIEMNA SAVLDAQRNA EINGIKNCRF VCSKAEDVMR SLLEEYLTVP EKQVTNAIEV  960
LKNGMHELQQ SCSSEKCFKN IVAIVDPPRS GLHPTAEDVM RSLLEEYLTV PEKQVTNAIE  1020
GSGKAIVTDE KKIVATDEEI IKDEKPNPEE SSSHEPENGK TASDSIENGM HELQQSCSSE  1080
KNKSPVRCFK NIVAIVDPPR SGLHPTVIKA LRTHSGLRRL VYISCNPETL VANAIELCTP  1140
SPDKIEKNKN NRAWRNMSSA GLARHRAKSM PASEPFRPVK AMAVDLFPHT VHCELVMLLE  1200
RSSPANGSYK LLNPNATVGV CIIFFKGGDL KSMVDFKCET RWEVMGGFWQ PPTADTISAS  1260
ESITGSDTLV TSDQRFVLGL FSPPNSTAWY LGLWYKKFPD VVVWVANREN PLPDSNGALK  1320
LSEKGSLILS DEMNNTVWSS NASRVAENPV AQLLVTGNLV VIDQALITTA AADSISYVYQ  1380
SFDYPSDTLL PDMKVGWDFR TGQNRFLTSW KDASDPSHGE YTYRIDNPEL PQLVVAQGSK  1440
KVFRTGPWNG LRLSGTPGSV VQTKPFLIRT FVYNTNEMYY TYEVIDDSIL TRVTMTESGL  1500
AQRLVVNEGS SEWAVLYTLQ NNQCDVYGEC GANGICKIYN SPICECLQGF VPISPKEWEF  1560
SNWTSGCTRR TKLHCEKGEG FVKINNVKLP DLLDFRVNKN LLRCGDCEAE CLRNCSCVAY  1620
ANSNITGGNK ACLMWFGKLI DMREIVELDG DQIHIRMPAS ELGDTSQRHK RIVLISVISS  1680
AGFMLLFLGL SCWYIYLKKR EKERGSRTSE EDLELPLFDY GTIATATNDF SGTNKLGEGG  1740
FGPVYKAKLT QEEFVAVKRL SRDSGQGLEE FKNEVTMIAN LQHWNLVKLL GCCIEGEERM  1800
LIYEYMPNKS LDCFIFDENK KLLLKWQKRR DIIIGIARGL LYLHEDSRLR IIHRDLKSSN  1860
ILLDDELNPK ISDFGIARIF RLNQTEAKTK RVIGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gyy_A2e-921260166214403S-receptor kinase SRK9
5gyy_B2e-921260166214403S-receptor kinase SRK9
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
118231829LKWQKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498IKG60.0A0A498IKG6_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein