PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000372.1.g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ZF-HD | ||||||||
Protein Properties | Length: 378aa MW: 41522.4 Da PI: 8.5953 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.2 | 4e-33 | 98 | 155 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++v YkeClkNhAaslGgha+DGCgEf ps+ ++ +++++lkCaACgCHRnFHRr+ FANhyb_rscf00000372.1.g00013.1 98 TAVSYKECLKNHAASLGGHALDGCGEFFPSPISNpSDPTSLKCAACGCHRNFHRRDAP 155 5799***************************9999********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.2E-27 | 100 | 153 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.7E-29 | 102 | 153 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.751 | 102 | 153 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-22 | 102 | 152 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.82E-16 | 235 | 305 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 238 | 307 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.8E-25 | 246 | 302 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MNLILSPCPR RKRSPFFPER FEVNKALIFD PHFPTQAMDF KSISTTATAA ATINTPDTDT 60 ELLPTSDPKS SAFRSLSYNN GPLLKPHHHH HPLPPPQTAV SYKECLKNHA ASLGGHALDG 120 CGEFFPSPIS NPSDPTSLKC AACGCHRNFH RRDAPDEPPA PTRHHRLLLP PPPAQHSMSP 180 SPSRSTSPGP STTLSPHSPP PVSHVPPSFF GTPTQMLLAL SSAAYTTAAP PSDEKLRNPT 240 AGNIGRKRSR TKFSQEQKDK MFCFAEKLGW RMQRSEDKVV EDFCDEIGIG RNVFKVWMHN 300 NKHHMVKRKQ MLLSSAGLIN DGGDAGGGAS FDSNAEENNN NNNDNVNVII NSPNESSRED 360 HHHHQRFYLS NNGSSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 5e-21 | 246 | 303 | 17 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298431.2 | 0.0 | PREDICTED: zinc-finger homeodomain protein 11-like | ||||
TrEMBL | A0A2P6R340 | 1e-149 | A0A2P6R340_ROSCH; Putative transcription factor ZF-HD family | ||||
STRING | XP_004298431.1 | 1e-174 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-27 | zinc finger homeodomain 1 |