PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000372.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 449aa MW: 48754.8 Da PI: 7.9984

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000372.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	79	139	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rnvPvG+grrknk++s FANhyb_rscf00000372.1.g00004.1 79 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGIMRNVPVGAGRRKNKNAS 139 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	70	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.5E-32	81	137	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.798	83	137	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	85	121	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MYDHNIVFNR KELAADKEEE NPSDQFTEDL KPPTTSSGIS ENPKTPSADR EASVSLKSSK 60 NGEQSDETSS SQDKTLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG 120 GIMRNVPVGA GRRKNKNASS SASHYRHMLM SDALQTAHSS AAAASNGAHN PTLGRNGTVL 180 TFGSDSPLCE SMASVLSLAE KTQNSAQNGF HVPDQQRILV PSIAGDNGDD QSSGSSNVTA 240 SYSSERVCKS GKQEPAVHNC QGFPSHQVPC FPGAPWPYPW NSPQWTSAMP PPAFIHSGFP 300 ISFYPAPPYW GCTGPGSWNV PCNSPPSSTI SHCGTSSGPN SPTLGKHPRD GDILHQASSQ 360 KEESSRQNKS GCVLIPKTLR IDDPSEAAKS SIWETLGIKN EKGNSINEGG IFKSFQSKAD 420 ERRQVVEQSS VLQANPAAFS RSLNFHERS

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MYDHNIVFNR KELAADKEEE NPSDQFTEDL KPPTTSSGIS ENPKTPSADR EASVSLKSSK  60
NGEQSDETSS SQDKTLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG  120
GIMRNVPVGA GRRKNKNASS SASHYRHMLM SDALQTAHSS AAAASNGAHN PTLGRNGTVL  180
TFGSDSPLCE SMASVLSLAE KTQNSAQNGF HVPDQQRILV PSIAGDNGDD QSSGSSNVTA  240
SYSSERVCKS GKQEPAVHNC QGFPSHQVPC FPGAPWPYPW NSPQWTSAMP PPAFIHSGFP  300
ISFYPAPPYW GCTGPGSWNV PCNSPPSSTI SHCGTSSGPN SPTLGKHPRD GDILHQASSQ  360
KEESSRQNKS GCVLIPKTLR IDDPSEAAKS SIWETLGIKN EKGNSINEGG IFKSFQSKAD  420
ERRQVVEQSS VLQANPAAFS RSLNFHERS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297294.1	0.0	PREDICTED: cyclic dof factor 3
TrEMBL	A0A2P6R2V6	0.0	A0A2P6R2V6_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004297294.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-99	cycling DOF factor 2