PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000372.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 316aa    MW: 35564.4 Da    PI: 8.3087
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000372.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-1656101147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     rg W + Ed +l+++v ++G+ +W++Ia+++  gR++k+c++rw++ 
  FANhyb_rscf00000372.1.g00001.1  56 RGHWRPAEDSKLKELVSLYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 101
                                     899*****************************.***********996 PP
2Myb_DNA-binding56.18.2e-18108151146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  FANhyb_rscf00000372.1.g00001.1 108 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 151
                                     678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.59951102IPR017930Myb domain
SMARTSM007174.7E-1455104IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-2856149IPR009057Homeodomain-like
PfamPF002491.1E-1556101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2557109IPR009057Homeodomain-like
CDDcd001678.18E-1359100No hitNo description
PROSITE profilePS5129426.929103157IPR017930Myb domain
SMARTSM007171.8E-14107155IPR001005SANT/Myb domain
PfamPF002491.6E-14108150IPR001005SANT/Myb domain
CDDcd001671.44E-11110150No hitNo description
Gene3DG3DSA:1.10.10.609.8E-21110156IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
STLGTRSAEE QLGHRNNNSD FRGGGKACSD SMSDDGTEEH NESMNHRNEQ SKQCARGHWR  60
PAEDSKLKEL VSLYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FSEEEEERLM  120
QAHRIYGNKW AMIARLFPGR TDNAVKNHWH VIMARKYREQ SSAYRRRKLS QSVLRASSME  180
ENMNSTPPAI LPYSYLNNYG SSGNLNNMAC WEEAAIITSK KVPPFQFLPG TNDEIAQVSS  240
GNFYDHPPYM MNVMAMRQSN YYHALQSYSD STPASPSLVS AGAGKLTSSS SSAADDQERR  300
DIAASSFIDF LGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-33551566107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298424.20.0PREDICTED: myb-like protein Q
TrEMBLA0A2P6R2T60.0A0A2P6R2T6_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004298424.11e-123(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.14e-78myb domain protein 117