PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000369.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SRS
Protein Properties Length: 293aa    MW: 31153.9 Da    PI: 8.8982
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000369.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702175.82e-541132543154
                          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelksk 81 
                                     sg  +C+dCGn+akk+C+++RCRtCC+ rg+dC+thv+stWvpaa+rrerq   + a + + as ++ +s   ++    
  FANhyb_rscf00000369.1.g00005.1 113 SGLRACKDCGNRAKKGCEYTRCRTCCRGRGYDCSTHVRSTWVPAARRRERQMGVTVAVTGDVASGSSGSSSVAKR---- 187
                                     56679*********************************************9999888777665543333333222.... PP

                          DUF702  82 kqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                         + s+k ++a+       +slP++v+++avf+c rv+++++ge+e+aYq++v+i+GhvfkG+Lyd+G+++
  FANhyb_rscf00000369.1.g00005.1 188 -PRFMMSSKNANAN-----LRQSLPDQVRAPAVFKCHRVTAISNGEAEIAYQATVKISGHVFKGLLYDRGIDK 254
                                     .2222222222222.....3467***********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.2E-55116253IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.3E-24118159IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-26205252IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MLGLRDILLI APNASSMHQQ TQPISSDHLP SSTALGVGLG IFPLLTATPC GPSAPIPEGN  60
PDNSRFWSLR TYPELNSSKQ DMLSFGNHAE SQQVAKSDDG NVNGDGGGGG EESGLRACKD  120
CGNRAKKGCE YTRCRTCCRG RGYDCSTHVR STWVPAARRR ERQMGVTVAV TGDVASGSSG  180
SSSVAKRPRF MMSSKNANAN LRQSLPDQVR APAVFKCHRV TAISNGEAEI AYQATVKISG  240
HVFKGLLYDR GIDKKNEYPC ISHLHLGSGS NQRNGDSSSP PVPPSNVCMA STS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307109.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 isoform X2
TrEMBLA0A2P6S9S51e-167A0A2P6S9S5_ROSCH; Putative transcription factor STY-LRP1 family
STRINGXP_004307109.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-44Lateral root primordium (LRP) protein-related