PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000366.1.g00004.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

CAMTA

Protein Properties

Length: 1103aa MW: 123110 Da PI: 7.7021

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000366.1.g00004.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	91.6	7.2e-29	26	99	3	75
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKv 75 +e k rwl+++ei+a+L n++ ++++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LK FANhyb_rscf00000366.1.g00004.1 26 EEaKGRWLRPNEIHALLYNYKYFTIHVKPVNLPPSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKA 99 45499********************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	43.72	21	152	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.1E-38	24	331	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-24	27	100	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	9.9E-4	555	644	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.2E-5	555	641	IPR002909	IPT domain
SuperFamily	SSF81296	2.16E-15	556	642	IPR014756	Immunoglobulin E-set
CDD	cd00204	2.79E-15	715	849	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.0E-16	740	853	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	7.0E-17	751	852	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.9E-7	752	819	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.857	757	822	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	12.155	790	822	IPR002110	Ankyrin repeat
SMART	SM00248	2.4E-6	790	819	IPR002110	Ankyrin repeat
SMART	SM00248	4400	829	859	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	6.742	938	964	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	88	953	975	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.181	954	983	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.097	976	998	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.048	977	1001	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.022	978	998	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	1056	1078	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.206	1058	1086	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1103 aa Download sequence Send to blast
MDKPLVGSEI HGFHTMQDLD VDTIMEEAKG RWLRPNEIHA LLYNYKYFTI HVKPVNLPPS 60 GTIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKAC YEADVHNGLK VRTSIRSPPS 120 GADDGAPPPE RIPKASPTTF PSRRDRFEGL GSNLHPKLQP RSISPENWNS ADSPGRESGR 180 GRLWCSSSFC SFSGAGPSSS ITLAFNLMPM ASEDGRSTAD RAGVPPFATV QRGHASTPAD 240 SSSVLDHFPS PASPPNSSFP ARLILFEVWG DLAEKLEFGG LTGEGKLVMK KGYMYTMPMV 300 RIAQPLSGGV IGCLISMSLE HIVLVHYRET QEVQGPATPV NSNSNSSSVS DPSAPWRLSE 360 ELDSGAKNSY YGGENELLEP GSGSTVNNHE QRLHDINTLE WDELLVTYDS RGDKVSGFDQ 420 QNQLVGNGTI SGGTSGLAAE VSSFGNLLNS SARTGSIHFD LPDSNYVQTL GGEVNSNAQR 480 RDSVVKGPCN SLNILGNDGL RSQDSFGRWI NQIMTDSPGS VDDHLLDSSF IAAQSSFTSP 540 AMEHIQSSVP EQIFIITDVS PSWAFSNEKT KILITGFFHQ EFLDLAKSNL LCICGDVCIP 600 AEIVQVGVYR CFIPPHVAGL VNLFISLDGH KPISQVLNFE YRSPVTSNSV VPSEENKWEE 660 FQLQMRLANL LFSSSKSLSI VSSKVSPYTL KEAKKFSHRT SHISNSWQYL IKSIEDNNTP 720 LPLAKDSLFE LILKNRLKDW LLEKVLDSSK TKEYDSHGQG VIHLCAILDY TWAVRLFSWS 780 GLSLDFRDRR GWTALHWAAY HGREKMVAVL LSAGAKPNLV TDPTSENPGG CTVADIASMN 840 GYDGLAAYLS EKALVEQFKD MSIAGNVSGS LQTNTNYYGN SENLSEEDLY LKDTLTAYQT 900 AADAAARIQA AIRENTLKLK TKAVQYSTPE DEARSIIAAL KIQHAFRHYD TRKKMAAAAR 960 IQYRFRTWKM RQEFLNMRRQ AVKIQAAFRA FQTRRQYQKI LWGVGVLEKA VLRWRLKRKG 1020 LRGLQVDPIE ANGDEKQESD TEEDFYRNSR KQAEERVERS VVRVQAMFRS KKAQQEYRRM 1080 KLTHNETKLE YDDFFDPDNS MRG

Sequence ? help Back to Top

Protein Sequence Length: 1103 aa Download sequence Send to blast

MDKPLVGSEI HGFHTMQDLD VDTIMEEAKG RWLRPNEIHA LLYNYKYFTI HVKPVNLPPS  60
GTIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKAC YEADVHNGLK VRTSIRSPPS  120
GADDGAPPPE RIPKASPTTF PSRRDRFEGL GSNLHPKLQP RSISPENWNS ADSPGRESGR  180
GRLWCSSSFC SFSGAGPSSS ITLAFNLMPM ASEDGRSTAD RAGVPPFATV QRGHASTPAD  240
SSSVLDHFPS PASPPNSSFP ARLILFEVWG DLAEKLEFGG LTGEGKLVMK KGYMYTMPMV  300
RIAQPLSGGV IGCLISMSLE HIVLVHYRET QEVQGPATPV NSNSNSSSVS DPSAPWRLSE  360
ELDSGAKNSY YGGENELLEP GSGSTVNNHE QRLHDINTLE WDELLVTYDS RGDKVSGFDQ  420
QNQLVGNGTI SGGTSGLAAE VSSFGNLLNS SARTGSIHFD LPDSNYVQTL GGEVNSNAQR  480
RDSVVKGPCN SLNILGNDGL RSQDSFGRWI NQIMTDSPGS VDDHLLDSSF IAAQSSFTSP  540
AMEHIQSSVP EQIFIITDVS PSWAFSNEKT KILITGFFHQ EFLDLAKSNL LCICGDVCIP  600
AEIVQVGVYR CFIPPHVAGL VNLFISLDGH KPISQVLNFE YRSPVTSNSV VPSEENKWEE  660
FQLQMRLANL LFSSSKSLSI VSSKVSPYTL KEAKKFSHRT SHISNSWQYL IKSIEDNNTP  720
LPLAKDSLFE LILKNRLKDW LLEKVLDSSK TKEYDSHGQG VIHLCAILDY TWAVRLFSWS  780
GLSLDFRDRR GWTALHWAAY HGREKMVAVL LSAGAKPNLV TDPTSENPGG CTVADIASMN  840
GYDGLAAYLS EKALVEQFKD MSIAGNVSGS LQTNTNYYGN SENLSEEDLY LKDTLTAYQT  900
AADAAARIQA AIRENTLKLK TKAVQYSTPE DEARSIIAAL KIQHAFRHYD TRKKMAAAAR  960
IQYRFRTWKM RQEFLNMRRQ AVKIQAAFRA FQTRRQYQKI LWGVGVLEKA VLRWRLKRKG  1020
LRGLQVDPIE ANGDEKQESD TEEDFYRNSR KQAEERVERS VVRVQAMFRS KKAQQEYRRM  1080
KLTHNETKLE YDDFFDPDNS MRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004295103.1	0.0	PREDICTED: calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2P6QYW4	0.0	A0A2P6QYW4_ROSCH; Putative transcription factor CG1-CAMTA family
STRING	XP_004295103.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]