PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000357.1.g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 245aa MW: 27821.9 Da PI: 10.3967 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00061 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ Fs+ L H+ H FANhyb_rscf00000357.1.g00005.1 33 YTCRLCSRAFSSTQALGGHQTAH 55 9***************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.85E-6 | 32 | 60 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.7E-4 | 33 | 59 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.237 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.2E-7 | 33 | 58 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MTCAEILCNP NMGDPLIAAP MRRSIESFSF NLYTCRLCSR AFSSTQALGG HQTAHRKEKS 60 ERLIRLIRQA ELDELKYAAD NDVVLSPEPI SWAPPATDDQ TIKVYDFMPM GDGTSRVPGS 120 GSENKAYDVE KKKKQQKRKF MNLSGCSKVN TEASDADQKK QKKRKYSQKL SECPENKAAD 180 ADKTEKKRKY STKLSDCSEN KASELEQKKQ KKKTKSTKSS ECPEHKASNT EKKKKKKKKK 240 KKKKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 244 | KKKKKKKKKKKKKR |
2 | 234 | 243 | KKKKKKKKKK |
3 | 236 | 244 | KKKKKKKKR |
4 | 238 | 244 | KKKKKKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011465813.1 | 6e-31 | PREDICTED: nucleolar protein 58-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26223 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05120.1 | 5e-08 | C2H2 family protein |