PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000346.1.g00012.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

BES1

Protein Properties

Length: 309aa MW: 34235.7 Da PI: 6.8645

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000346.1.g00012.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	139	4.8e-43	58	181	2	134
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeae 80 ++gr++++kE+E++k+RER RR i+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve+DGttyr++ + FANhyb_rscf00000346.1.g00012.1 58 TKGRREREKEKERTKLRERLRRSITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEPDGTTYRQSPPQI---V 133 789******************************************************************553333...3 PP DUF822 81 aagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa....a 134 a s + +s+e++++ + +++ + ++++sp+slds+ +a++ + FANhyb_rscf00000346.1.g00012.1 134 GAYSMNLRSVETPVS----------LECHPQSVARIDESLSPASLDSVVIAEKndrfS 181 333333344455444..........333444555555555566666655555433332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.0E-41	59	184	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.24E-22	210	293	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.0E-24	211	291	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.4E-9	235	293	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.3E-8	248	262	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.3E-8	269	287	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MNDDSLRQDL DPQSDQSSDY LPPQPHPLPS QPHPHPRRPR GFAATAAAGS AGPISPSTKG 60 RREREKEKER TKLRERLRRS ITSRMLAGLR QYGNFPLPAR ADMNDVLAAL AREAGWVVEP 120 DGTTYRQSPP QIVGAYSMNL RSVETPVSLE CHPQSVARID ESLSPASLDS VVIAEKNDRF 180 SSGSPAMNSV NCLEADQLMQ HIPSATGFAP APYVPLYVTL ATGFVNNYCQ LVDPDGLRQE 240 LTHLQSLNVD GVVVDCWWGI VECWSPHKYD WSGYRGLFNI VREFKLKLQT MKSLSCAIKT 300 ELAPLVSDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1btc_A	5e-19	213	294	7	88	BETA-AMYLASE
1bya_A	5e-19	213	294	11	92	BETA-AMYLASE
1byb_A	5e-19	213	294	11	92	BETA-AMYLASE
1byc_A	5e-19	213	294	11	92	BETA-AMYLASE
1byd_A	5e-19	213	294	11	92	BETA-AMYLASE
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011465289.1	0.0	PREDICTED: beta-amylase 8
Swissprot	Q9FH80	9e-88	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A2P6PBE0	1e-141	A0A2P6PBE0_ROSCH; Beta-amylase
STRING	XP_004301768.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11902	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	7e-83	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]