PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000328.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29534.4 Da    PI: 6.9059
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000328.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.52.6e-26959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    +rienk+ rqvtf+kRr+g+lKK +ELSvLCd+++ ++ifsstgk++ y+s
  FANhyb_rscf00000328.1.g00008.1  9 SRIENKTTRQVTFAKRRAGLLKKTHELSVLCDVQIGLVIFSSTGKMFQYCS 59
                                    59***********************************************96 PP
2K-box56.99.1e-2071170199
                           K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                                     yq ssg++  ++++ae l+ e++k++ke++ L  ++ ++ GedL+   +++L++Le++Le+s++++R++K e+l ++++
  FANhyb_rscf00000328.1.g00008.1  71 YQYSSGTRiPQHSDAEILNAEIRKIRKETQDLHLSLQRYTGEDLSCVRFEDLEELENRLEESVNRVRARKFEILQQEVN 149
                                     566777887889999**************************************************************** PP

                           K-box  79 elqkkekelqeenkaLrkkle 99 
                                     +l+   k+ +e+n +L + ++
  FANhyb_rscf00000328.1.g00008.1 150 NLRISTKQREEQNDELCHLIK 170
                                     **************9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.632161IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-30282IPR002100Transcription factor, MADS-box
CDDcd002659.36E-40276No hitNo description
PRINTSPR004046.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1781168IPR002487Transcription factor, K-box
PROSITE profilePS5129712.56485175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGKINISR IENKTTRQVT FAKRRAGLLK KTHELSVLCD VQIGLVIFSS TGKMFQYCSD  60
STSMDDMIRR YQYSSGTRIP QHSDAEILNA EIRKIRKETQ DLHLSLQRYT GEDLSCVRFE  120
DLEELENRLE ESVNRVRARK FEILQQEVNN LRISTKQREE QNDELCHLIK EHQAAVFTHQ  180
HHYQQQMGME PRSEEHRQLM EQFPFCGEEQ PLLQLATTSM QPQFAAYPAS SSSLPPNPPH  240
LHEFSLNTPI YGIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-21171169MEF2C
5f28_B4e-21171169MEF2C
5f28_C4e-21171169MEF2C
5f28_D4e-21171169MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293770.10.0PREDICTED: MADS-box protein FBP24 isoform X2
TrEMBLA0A2P6Q7871e-162A0A2P6Q787_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004293770.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-50MIKC_MADS family protein