PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000325.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 375aa    MW: 41477.2 Da    PI: 9.0286
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000325.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP89.19.5e-2859169389
                             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssas 71 
                                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl+     i +l+ +          ++s+a 
  FANhyb_rscf00000325.1.g00005.1  59 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEVTDDDIEKLPPLqllphhgllnTTSTA- 136
                                     78*************************************************************544444444322222. PP

                             TCP  72 eceaesssssasnsssg......................k 89 
                                          +++  ++++  +                      +
  FANhyb_rscf00000325.1.g00005.1 137 -----HHQFHQHQQ--QilnplnvpffdvnrrlteqvvlD 169
                                     .....111111111..122344445555555555544442 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.83960118IPR017887Transcription factor TCP subgroup
PfamPF036348.2E-2660139IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MITDPRGKGF QAKQEGQNNN NDGNTMSSYN KAASSSTTTS RQWSGFRNPR IVRVSRTFGG  60
KDRHSKVSTV RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVIDWLLEV TDDDIEKLPP  120
LQLLPHHGLL NTTSTAHHQF HQHQQQILNP LNVPFFDVNR RLTEQVVLDE SKGKSIKDHD  180
DQALAQKLFP IGNMPSSIPG LLNNAMAYNN YFQNHNSEPS CLSLSQFGSS SHGFPLVPQM  240
DHMMSSNNGL SFSNTSMPMA SGSQLFFCPS TATPVPSLFG PYAPYITATT PVVENSSTSN  300
DQQPALRQTN NHMIQLLSSA RTTSQNFAPN NVLMPSLQYS IGSSLRSFPT LDDLKLHSQN  360
HNASSSQPNK DDTGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1865119155Putative transcription factor PCF6
5zkt_B2e-1865119155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301109.20.0PREDICTED: transcription factor TCP5
RefseqXP_011464305.10.0PREDICTED: transcription factor TCP5
TrEMBLA0A2P6P3330.0A0A2P6P333_ROSCH; Putative transcription factor TCP family
STRINGXP_004301109.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5