PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000321.1.g00008.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 301aa MW: 32829.3 Da PI: 6.7694

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000321.1.g00008.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.6	7.4e-35	18	72	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC +ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ FANhyb_rscf00000321.1.g00008.1 18 NCPRCGCSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 72 7***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.211	17	71	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-24	17	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-29	18	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MERSGWKPND DHHHICPNCP RCGCSNTKFC YYNNYSLTQP RYFCKGCRRY WTKGGSLRNV 60 PVGGGCRKNR RGSRSLRLST NTTAANGSNN AHSGTTGHNS YGISNSLAPE STSSGVSNQD 120 APPRIDLAVV YANFLNQKPY SKSSGGSDHQ LPELPGEFDQ GLDFSSCIAN MNINAGSGSS 180 IQLMEGNGLI GSIGCQSTVS ENCGTINDNM YFGGLDPLID HHQKHQDLSS DLVQYTSSAH 240 ESTDFGLPPL PDQEVLWSRS HDQMMVSPIM QPTSMVGPEA HDPNLLNWSP LFDLPCTFSR 300 T

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004305582.1	0.0	PREDICTED: dof zinc finger protein DOF3.2
TrEMBL	A0A2P6RCL2	0.0	A0A2P6RCL2_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004305582.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	3e-41	Dof family protein