PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000320.1.g00009.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 216aa    MW: 24157 Da    PI: 9.2059
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000320.1.g00009.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-164290355
                             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                    + GVr+++ +grWvAeI+d s+   + r +lg+f+ aeeAa a+++a++ l+g
  FANhyb_rscf00000320.1.g00009.1 42 FLGVRQRP-SGRWVAEIKDSSQ---NLRLWLGTFDRAEEAALAYDKAARVLRG 90
                                    67******.7*********543...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-3241104IPR001471AP2/ERF domain
PROSITE profilePS5103219.9414198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-2841100IPR001471AP2/ERF domain
CDDcd000189.24E-3041100No hitNo description
PRINTSPR003676.0E-74253IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-1942100IPR016177DNA-binding domain
PfamPF008472.2E-104490IPR001471AP2/ERF domain
PRINTSPR003676.0E-76480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDSLESSTPN QKETFHENKE SSCLSTSVIK VPKKAKINGR RFLGVRQRPS GRWVAEIKDS  60
SQNLRLWLGT FDRAEEAALA YDKAARVLRG RNAKTNFPSS HQQHGMNFMN IHEENCNILR  120
KNPRLYQLLQ HAIMKNHAAI SRSSSSSRII GSKEAQSDSN DKYFDTLVEE TIVCSSSSTS  180
TACDVRDYDD YHCALPFGTS KVYSSVVVAP SFSATS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-173998363ATERF1
3gcc_A7e-173998363ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299253.11e-160PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A3S8T9291e-159A0A3S8T929_FRAAN; Transcription factor ERF43
STRINGXP_004299253.11e-160(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18related to AP2 11