PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000320.1.g00006.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YB
Protein Properties Length: 192aa    MW: 21399.3 Da    PI: 4.561
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000320.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB67.82.1e-21551291185
                           NF-YB  11 anvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                                     a +++i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al  lGf +y+e++ +
  FANhyb_rscf00000320.1.g00006.1  55 ATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCSREEKRTIAPEHVLKALQVLGFSEYIEEVYA 129
                                     7789*******************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.0E-1855115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.9E-3455176IPR009072Histone-fold
SuperFamilySSF471132.75E-3055178IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEPMDIVGKS KEDASLPKDG DGLLKPERCL CRSTWFGVAI LPHATCSGFH FESEATMTKI  60
IKEMLPPDVR VARDAQDLLI ECCVEFINLI SSESNEVCSR EEKRTIAPEH VLKALQVLGF  120
SEYIEEVYAA YEQHKIETVH DVAKSVKWGN GAEMTEEQAL AEQQRMFAEA RARMNGGATA  180
PKQPDPDQSL ES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B4e-295517119133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299249.11e-104PREDICTED: protein Dr1 homolog
SwissprotP495923e-83NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A2P6P3F81e-102A0A2P6P3F8_ROSCH; Putative transcription factor Hap3/NF-YB family
STRINGXP_004299249.11e-104(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.21e-85nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]