PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000319.1.g00011.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 489aa MW: 52917.2 Da PI: 7.683

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000319.1.g00011.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.3	8.6e-30	204	261	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++tYeg+Hnh+ FANhyb_rscf00000319.1.g00011.1 204 DGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITTYEGTHNHP 261 9************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-31	188	263	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-27	196	263	IPR003657	WRKY domain
PROSITE profile	PS50811	28.461	197	263	IPR003657	WRKY domain
SMART	SM00774	6.7E-37	202	262	IPR003657	WRKY domain
Pfam	PF03106	5.2E-27	204	261	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MPNSDSTAAA AVGTKVESFG YQEGQENYEL VNAKAEMSEV REENARLKKT LEHMTKDYQS 60 LQLRFFDILK QESHSKKATM SATTSHVEIE EPHDQLLSLC LGRSPRDPKN VSDEGKLVQA 120 DHHQDLKANL TLGLGSKLQL PTELVLSGPI PETSSEEPKE SEASPSSTKK TIRNEDDEAS 180 QQAIAAKRAR VSVRARCDTP TMIDGCQWRK YGQKIAKGNP CPRAYYRCTV APGCPVRKQV 240 QRCIDDMSIL ITTYEGTHNH PLPMTATSMA STTSAAASML LSGSSTSQLP GLGSSNGLGF 300 GLFDNSRQQP YMPKLSSSPL FPTVTLDLTS SPSPSSNQYC TFPPSLSFCS SESNINLPTS 360 WGNVYPRFGT QFDRKNQECF QPNHQASSQV SLRETLTKAI TSDPNFKSVI AVALSSMVGG 420 GAASYGSQGI GERLGQHLTQ NGKGCSSSIF NSLSSSDSQK GNLTLLQPPL PFPESKSTTS 480 SPAIRDKSL

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MPNSDSTAAA AVGTKVESFG YQEGQENYEL VNAKAEMSEV REENARLKKT LEHMTKDYQS  60
LQLRFFDILK QESHSKKATM SATTSHVEIE EPHDQLLSLC LGRSPRDPKN VSDEGKLVQA  120
DHHQDLKANL TLGLGSKLQL PTELVLSGPI PETSSEEPKE SEASPSSTKK TIRNEDDEAS  180
QQAIAAKRAR VSVRARCDTP TMIDGCQWRK YGQKIAKGNP CPRAYYRCTV APGCPVRKQV  240
QRCIDDMSIL ITTYEGTHNH PLPMTATSMA STTSAAASML LSGSSTSQLP GLGSSNGLGF  300
GLFDNSRQQP YMPKLSSSPL FPTVTLDLTS SPSPSSNQYC TFPPSLSFCS SESNINLPTS  360
WGNVYPRFGT QFDRKNQECF QPNHQASSQV SLRETLTKAI TSDPNFKSVI AVALSSMVGG  420
GAASYGSQGI GERLGQHLTQ NGKGCSSSIF NSLSSSDSQK GNLTLLQPPL PFPESKSTTS  480
SPAIRDKSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	189	263	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004302348.1	0.0	PREDICTED: probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-104	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2P6S4R2	0.0	A0A2P6S4R2_ROSCH; Putative transcription factor WRKY family
STRING	XP_004302348.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-70	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]