PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000315.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 303aa    MW: 34871.4 Da    PI: 9.9678
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000315.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.58.1e-14101143248
                             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaia 48 
                                      ykGVr++k +g++vAeIrd +     + +r +lg f taeeA  a+  
  FANhyb_rscf00000315.1.g00001.1 101 EYKGVRRRK-WGKYVAEIRDpF-----QkTRLWLGVFTTAEEANMAYQT 143
                                     59****998.**********55.....34**************999965 PP
2AP2224.2e-07194234139
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpse...ng.kr.krfslgkfgta 39 
                                     ++ykGVr++ k+  ++A  +   +   +  +   +fs++++gt+
  FANhyb_rscf00000315.1.g00001.1 194 TKYKGVRRRTKWRAYAAKSQ---DlsaDAaIEtVSFSCNTYGTK 234
                                     69****************55...4422447668*********95 PP
3AP243.95.9e-14252301154
                             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                                     +++kGVr+ k  g++ AeIrd +     r +r++lg+f taeeA  a++  r k+ 
  FANhyb_rscf00000315.1.g00001.1 252 TKCKGVRRTK-GGKYSAEIRDpF-----RkTRVWLGTFTTAEEAFMAYETKRVKFD 301
                                     699****777.9*********77.....45*******************9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.635101162IPR001471AP2/ERF domain
SMARTSM003804.7E-15101168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-19101148IPR001471AP2/ERF domain
PfamPF008474.4E-7101141IPR001471AP2/ERF domain
CDDcd000185.75E-18102141No hitNo description
SuperFamilySSF541715.04E-15102148IPR016177DNA-binding domain
PRINTSPR003676.4E-8102113IPR001471AP2/ERF domain
PRINTSPR003676.4E-8124140IPR001471AP2/ERF domain
CDDcd000182.80E-14252293No hitNo description
SMARTSM003802.8E-5253302IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-13253300IPR016177DNA-binding domain
PfamPF008477.2E-7253297IPR001471AP2/ERF domain
PROSITE profilePS5103216.067253303IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-16255300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKRETKMKQP SKDQDTSSTK RIRIICDDPY ATDCSSEDDA DYNVKKNRSV CNKHVVSEIL  60
VGDAQCESSA KNSFNCNTYG TKFGNCMDVD DSEKTRRCGT EYKGVRRRKW GKYVAEIRDP  120
FQKTRLWLGV FTTAEEANMA YQTKKAEFDN RRLLQETKSN LKKLQASNKA KGVCVTKRNC  180
IDVDDSEKTR RCSTKYKGVR RRTKWRAYAA KSQDLSADAA IETVSFSCNT YGTKFGNCMD  240
VDESEKTRRC ITKCKGVRRT KGGKYSAEIR DPFRKTRVWL GTFTTAEEAF MAYETKRVKF  300
DNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108KGVRRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306653.10.0PREDICTED: uncharacterized protein LOC101307919 isoform X1
TrEMBLA0A3Q8TB080.0A0A3Q8TB08_FRAAN; Transcription factor ERF46
STRINGXP_004306653.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-24ERF family protein