PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000311.1.g00007.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 672aa    MW: 75253 Da    PI: 5.547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000311.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-13406449755
                                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                      +Er+RR+++N+++ eLr+l+P+ +      Kl+ a+iL  A+eY+ +Lq
  FANhyb_rscf00000311.1.g00007.1 406 VAERKRRKKLNDRLYELRSLVPNiS------KLDRASILGDAIEYVMELQ 449
                                     68*********************66......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-1958210IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.247399448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.34E-13401451No hitNo description
SuperFamilySSF474599.81E-17402460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-16405454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-11406449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16406461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF069162.7E-23545656IPR009688Domain of unknown function DUF1279
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MDLYLCFFCC AFVASSILVL FYLLICSILP KISKARQTAH IISCKLGVMN NIIMSNLIQR  60
LRPLVGLKGW DFCVVWKLSE DQSFVEWMDC CCSGTEMSTQ DGGYEDHLLF PVVSAVLPCR  120
DTLLQHPRTT SCDLLSKMSS SVPLDYGIYA ETLMFNQPSW LNFSNSTFSS TSTEEETVGT  180
RVLMPIPGGL VELLVAKQVL EDQHVIDFIT EQYNFSVEQN HIGTSFGVNL DIHDGIQSKQ  240
VILDHEQMDP SNRIICSSDN SAMNFLQQFT HNLGNRMKNS SYNVNSFEDP SHEQFLSDKQ  300
MDHSLHNCSA KTVFDQAMET MQQSMMMSET QATHHMHMQF MDQSLEPDMD HEQDAGNNDK  360
DSNIINDDGE QATDLNSDCS DHDQLDAEDD AKYQRRTGKG QAKNLVAERK RRKKLNDRLY  420
ELRSLVPNIS KLDRASILGD AIEYVMELQN QAKKLQDELD DDHDHEEDRH VHEGAANKQC  480
GITFQHNSIQ SEIDQSQSGV DLKAEQNDHQ APNEDIKQDF RQKPKPHPKP TKLLLSSSAS  540
MAGGRFRELL KKYGKVALGV HCSVSAASIA GLYVAIKSNV DVESLIEKLP NLNPLKSSTE  600
EKHTSESGPS AAVVEEKKRN RTAELAASSG GALALAFLCN KALFPIRVPI TLAVTPPLAK  660
FLSRRRLIKT GL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1407414ERKRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458683.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
TrEMBLA0A2P6PSR30.0A0A2P6PSR3_ROSCH; Putative transcription factor bHLH family
STRINGXP_004292632.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-48bHLH family protein