PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000300.1.g00010.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YC
Protein Properties Length: 251aa    MW: 27555.2 Da    PI: 4.1493
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000300.1.g00010.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC41.72.5e-131242022097
                           NF-YC  20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivp 97 
                                     elP  r+kki+k d+d+++i +ea  l+s + +lf+  l+  s   a e+kr+ +k   i +a +r   + dfl+d+ p
  FANhyb_rscf00000300.1.g00010.1 124 ELPTGRVKKIMKLDPDINKINSEALHLVSCSAQLFLQFLAEGSGEAAMEKKRKIVKLEHIRTAAKRhCATRDFLLDELP 202
                                     89**********************************************************98887626789*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-16120186IPR009072Histone-fold
SuperFamilySSF471132.01E-15122189IPR009072Histone-fold
PfamPF008082.1E-16124186IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAENDTAAAT PPQMAEEEED PSPIRPESGE ETAVRPEPTE ENTATIQPVS EEENPQPQIA  60
EEEEPPLAEE DDAATTRPES GEEKAVGSEP EEENTTPIEI ASEEENEAEG EKENPDQPGR  120
IRLELPTGRV KKIMKLDPDI NKINSEALHL VSCSAQLFLQ FLAEGSGEAA MEKKRKIVKL  180
EHIRTAAKRH CATRDFLLDE LPVPAQPSDQ KSADRSRART VADNPAPAGT RRIDDFFSKS  240
ATKSPVQVEE S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004310214.11e-150PREDICTED: DNA polymerase epsilon subunit C
STRINGXP_004310214.11e-149(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.14e-46nuclear factor Y, subunit C13