PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000296.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 524aa    MW: 57998.5 Da    PI: 5.6997
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000296.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.62.6e-1381545241374
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                     l+e+L +cAea++++d++ +++l+++l++++s +g+p+qRl ay++e+L arla+++s +y++l+++e +   s+e l+
  FANhyb_rscf00000296.1.g00005.1 154 LKEVLCACAEALAENDMSTTEWLMSNLRQMVSVSGEPVQRLGAYMLEGLVARLASTGSCIYASLRCKEPA---SAELLS 229
                                     5789*****************************************************************9...9***** PP

                            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..ske 156
                                     ++++++e++P++kf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+qaLasRp+gpp++R+Tg+++++s   +  
  FANhyb_rscf00000296.1.g00005.1 230 YMHILYEICPYFKFGYMSANGAIAEAMKDESRVHIIDFQIAQGSQWITLIQALASRPGGPPHIRLTGIDDSTSAyaRGG 308
                                     **********************************************************************998899999 PP

                            GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                      l  +g+rL+++Ae+ +vpfef++ +  + ++++le+L+v++gEalaVn+++ lh+++desvs+e++rd++L++vksls
  FANhyb_rscf00000296.1.g00005.1 309 GLDLVGKRLSRLAESYKVPFEFHA-AGISASEVQLEDLAVQTGEALAVNFAFTLHHMPDESVSIENHRDRLLRVVKSLS 386
                                     ************************.7889************************************************** PP

                            GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                                     Pkvv++veqe+++n+++F  rf+ea++yy a+fds++a lpre++eri+vE+++l+reivn++aceg er+er+e l+k
  FANhyb_rscf00000296.1.g00005.1 387 PKVVTLVEQESNTNTAPFCPRFTEAFSYYGAIFDSIDAALPREHKERINVEQHCLAREIVNIIACEGVERVERTELLSK 465
                                     ******************************************************************************* PP

                            GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     Wr+r+++aGF+p+pls+ +++++k+ll+ ++++ y++ee++g+l+lgWk+++Lv+ +aWr
  FANhyb_rscf00000296.1.g00005.1 466 WRSRFMMAGFSPYPLSSIINATIKTLLQSYSEK-YTLEERDGALYLGWKNQALVASCAWR 524
                                     *******************************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.638128505IPR005202Transcription factor GRAS
PfamPF035148.9E-136154524IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MRATERHGSV SHKFVEQPVE APGSYGFPSI HNVAIQGEHL SPHNFEQYES SSATSKYHVQ  60
SSPSSLSFSA HGSPTSQPDM QSYQSSGSPL NQSCLTNDVG GLSLKIRELE SLLLGNESDV  120
LDIYGITSQV KHNQDLSGEQ NWKQMMEMIS RGDLKEVLCA CAEALAENDM STTEWLMSNL  180
RQMVSVSGEP VQRLGAYMLE GLVARLASTG SCIYASLRCK EPASAELLSY MHILYEICPY  240
FKFGYMSANG AIAEAMKDES RVHIIDFQIA QGSQWITLIQ ALASRPGGPP HIRLTGIDDS  300
TSAYARGGGL DLVGKRLSRL AESYKVPFEF HAAGISASEV QLEDLAVQTG EALAVNFAFT  360
LHHMPDESVS IENHRDRLLR VVKSLSPKVV TLVEQESNTN TAPFCPRFTE AFSYYGAIFD  420
SIDAALPREH KERINVEQHC LAREIVNIIA CEGVERVERT ELLSKWRSRF MMAGFSPYPL  480
SSIINATIKT LLQSYSEKYT LEERDGALYL GWKNQALVAS CAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6516152326378Protein SCARECROW
5b3h_A8e-6516152325377Protein SCARECROW
5b3h_D8e-6516152325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294461.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_004294462.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2P6QD520.0A0A2P6QD52_ROSCH; Putative transcription factor GRAS family
STRINGXP_004294461.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]