PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000290.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 567aa    MW: 62734.4 Da    PI: 7.08
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000290.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.7e-30257315259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     +Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+
  FANhyb_rscf00000290.1.g00001.1 257 NDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCAEDMSILITTYEGNHNHP 315
                                     8**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-32241317IPR003657WRKY domain
SuperFamilySSF1182903.27E-27249317IPR003657WRKY domain
PROSITE profilePS5081129.08251317IPR003657WRKY domain
SMARTSM007743.5E-37256316IPR003657WRKY domain
PfamPF031069.1E-27257315IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MENNRMKSDD DDSEGTSKDI NKEAHVEEVA DEGKYRLKLQ PSTTQKHRAE SKHKQEADHD  60
ELESAKAEMG KVREENERLK LFLARIVKDY QDLQMHFLHI IQKEETKLKK TVDTSSTAEH  120
EGTISAEADE LVSLSLGRTS STASTHDHQL RKDNHEMMMK KTSKDNDDEV MNEAGLALEL  180
GCRSFEPAAY DHDTMKVHSS SENNSSAHGD PKEDEVTEIW PPSKMLKTRE DDVSQQLTHL  240
KKARVSVRAR CDAPTLNDGC QWRKYGQKIA KGNPCPRAYY RCTVSPSCPV RKQVQRCAED  300
MSILITTYEG NHNHPLPMSA TAMASTTSAA ASMLQSHSST SQQGLVNSTT APVPPPLSQF  360
YFPNSTISTN NSHPTITLDL TAPPHSQFGL RFPSGLPRYS SSTSLNFSSS SSSYLDHNTL  420
LQAPNWINNH AAAGYFNYGT RFSHHNRMNQ AVSGSSLNIG KHPFQEPNFY HSYIQSSQKA  480
APTPPQHHLF TETIATATKA ITSNPKFQSA LATALTSFVG TNGSTSGAVR ENSHIVNGSS  540
SSESSGLKLK WPLEQPRTES GVHHQAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-222563171777Probable WRKY transcription factor 4
2lex_A7e-222563171777Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298443.20.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A2P6R3320.0A0A2P6R332_ROSCH; Putative transcription factor WRKY family
STRINGXP_004298443.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-71WRKY DNA-binding protein 72