PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000274.1.g00011.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 934aa    MW: 106448 Da    PI: 7.8848
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000274.1.g00011.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.87.5e-1861180189
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............................te 49 
                                     kfY+ Y+   GFsvrk k  k++  + +++r++vCsk+gkr+e+  +                               +
  FANhyb_rscf00000274.1.g00011.1  61 KFYSYYSLAKGFSVRKYKLDKNRSGTLVIRRQLVCSKQGKRKESAPNshqqgskgkhdncqhcqqdlmgekniswqnPH 139
                                     6******************************************999999**************************9878 PP

                            FAR1  50 kerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                                     k++ tr +tr++C a+++v++ + +g+++ +++ +eHnH+l
  FANhyb_rscf00000274.1.g00011.1 140 KKQCTRRTTRINCPASFTVRLCTkRGVYYASEFITEHNHAL 180
                                     8888*****************999***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-1561180IPR004330FAR1 DNA binding domain
PfamPF105515.6E-21297390IPR018289MULE transposase domain
PROSITE profilePS5096610.064575613IPR007527Zinc finger, SWIM-type
SMARTSM005753.2E-4588615IPR006564Zinc finger, PMZ-type
PfamPF044340.0013590609IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:3.30.1330.401.5E-13780831IPR013813Endoribonuclease L-PSP/chorismate mutase-like
SuperFamilySSF552985.89E-11780831IPR013813Endoribonuclease L-PSP/chorismate mutase-like
PfamPF010428.5E-11786831IPR006175YjgF/YER057c/UK114 family
CDDcd004484.25E-35795932No hitNo description
SuperFamilySSF552986.28E-23863933IPR013813Endoribonuclease L-PSP/chorismate mutase-like
PfamPF010421.7E-21864933IPR006175YjgF/YER057c/UK114 family
Gene3DG3DSA:3.30.1330.402.6E-25864933IPR013813Endoribonuclease L-PSP/chorismate mutase-like
PROSITE patternPS010940910928IPR019897RidA, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009082Biological Processbranched-chain amino acid biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0005739Cellular Componentmitochondrion
GO:0005773Cellular Componentvacuole
GO:0009570Cellular Componentchloroplast stroma
GO:0009579Cellular Componentthylakoid
GO:0009941Cellular Componentchloroplast envelope
GO:0008270Molecular Functionzinc ion binding
GO:0019239Molecular Functiondeaminase activity
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MDPNTEEGSN TDSSDEEIEY SNLIEEAEMQ DCTRCRGKLY KDLTFEDLKE VEFNSIEEVD  60
KFYSYYSLAK GFSVRKYKLD KNRSGTLVIR RQLVCSKQGK RKESAPNSHQ QGSKGKHDNC  120
QHCQQDLMGE KNISWQNPHK KQCTRRTTRI NCPASFTVRL CTKRGVYYAS EFITEHNHAL  180
GRHEHRQFRR SHPKKHDLAQ VNASRKVSAR TCHAYEFLVH PARGYEFVRL YNKPQGEMKE  240
VVMDGDVQSL VTWMNFKAMR DPHFYGIFSV DKEGRLANLF WRDGQSLTDY NAFGDILIFD  300
SSEKCNIYGK PLAVFVGCNN HRATVLFGCA LLVDQTEETY DWVITCFLTS MHGKKPTSVI  360
TNSDDAIGNV VTNLIPKARH RLCAWHVGKN GCQHLEDVDT QRHFFYLIFA GLINEEWESA  420
WQYFMTLNHL ENNEWVTSMY NKRERWAEAF FRDHFFGGIC STQRCDEMHR NLEEGIDCYM  480
KLYEVLPRME KTIERIRNQV LQDDYRSQNY SPVYGNHMRC LQEEIGKKFT RDIFLLIKEQ  540
INFESNFVIG QRGVHPTTGA SLISLMQYGK PEKMWIVSYQ PYESNPTFVC SCKLFESDGI  600
PCCHIFAVMK FEMLTTLPES LVNKRWTKEA TVKRTLSSSG LVSNMSVQIA RYGDLMAQCA  660
KICHMSSYSE EGYDETREAL SQLTVQSQKY WGGSEFEDSV LTQSQPVTEA QVRHSDMAWT  720
AARSFHMPTI DMAALRTRAP LAVGVGCASV AGSGLWRSSL SSKPSSRFAC LATSTDTRIK  780
EAVKTDKAPA ALGPYSQAIK ANNVLYVSGC LGLIPETGKF VSDDVEGQTE QKSTVAVISA  840
RKAYTIALKN LILKRNYQLN LWFLKNMGEI LKASGADYSS VVKTTILLAD LKDFKAVNEI  900
YAKYFPSPAP ARSTFQVAAL PLDAKIEIEC IAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hp7_A2e-587839344124Reactive Intermediate Deaminase A, chloroplastic
5hp8_A2e-587839344124Reactive Intermediate Deaminase A, chloroplastic
5hp8_B2e-587839344124Reactive Intermediate Deaminase A, chloroplastic
5hp8_C2e-587839344124Reactive Intermediate Deaminase A, chloroplastic
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294380.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like
RefseqXP_011461031.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like
RefseqXP_011461032.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9-like
TrEMBLA0A2P6QC950.0A0A2P6QC95_ROSCH; Putative transcription factor FAR family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF422222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-67FAR1-related sequence 5