PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000269.1.g00009.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family BBR-BPC
Protein Properties Length: 262aa    MW: 29049.4 Da    PI: 10.038
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000269.1.g00009.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind28.93.4e-09175166
                       GAGA_bind  1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki..rernlalsekkaavaerd.........maflqrdka 66
                                    mddd+ +  n+gyye +  +k +lglqlm+s+ erd+k+    r+  ++ + + +++rd         m+  +r++a
  FANhyb_rscf00000269.1.g00009.1  1 MDDDSLNMPNWGYYEAS--FKGHLGLQLMTSMGERDTKPfiPGRDPPVMVSANGYHPRDcvvqdapvpMSNYMRETA 75
                                    999988889*****988..*******************9994555555788899*****777777777443355554 PP
2GAGA_bind275.72.3e-8476254114301
                       GAGA_bind 114 lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekk 192
                                     ++  q+ +++ ++++ e ++ +   e++ ++ke   +kkrq++  pk++k kk++k    +k++++++   +r+k  kk
  FANhyb_rscf00000269.1.g00009.1  76 QHAMQILQPPPDISRDERVNRM---EEPVVHKEGGPSKKRQNGGAPKAPKVKKPRK----PKDNSNPAV--PRVKPAKK 145
                                     2446666677776655544444...3677888889999999*********999999....444555555..789***** PP

                       GAGA_bind 193 sidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
                                     s ++v+ng+ lD+s++ +PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+Lek
  FANhyb_rscf00000269.1.g00009.1 146 SFEVVINGIPLDISGISIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEK 224
                                     ******************************************************************************* PP

                       GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                     La+eGy+++np+DL++hWA+HGtnkfvtir
  FANhyb_rscf00000269.1.g00009.1 225 LASEGYNFANPIDLRTHWARHGTNKFVTIR 254
                                     *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062178.3E-971254IPR010409GAGA-binding transcriptional activator
SMARTSM012262.0E-1421254IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDDDSLNMPN WGYYEASFKG HLGLQLMTSM GERDTKPFIP GRDPPVMVSA NGYHPRDCVV  60
QDAPVPMSNY MRETAQHAMQ ILQPPPDISR DERVNRMEEP VVHKEGGPSK KRQNGGAPKA  120
PKVKKPRKPK DNSNPAVPRV KPAKKSFEVV INGIPLDISG ISIPVCSCTG TPQQCYRWGC  180
GGWQSACCTT NVSMYPLPMS TKRRGARIAG RKMSQGAFKK VLEKLASEGY NFANPIDLRT  240
HWARHGTNKF VTIRDLSVNC SP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297808.11e-174PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD05e-95BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A2P6R4C61e-165A0A2P6R4C6_ROSCH; Putative transcription factor GAGA-Binding-like family
STRINGXP_004297808.11e-174(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-92basic pentacysteine 2