PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000261.1.g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | SRS | ||||||||
Protein Properties | Length: 221aa MW: 24600.5 Da PI: 8.4015 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 179 | 2.1e-55 | 21 | 177 | 5 | 153 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrk 75 +++C+dCGn+akk+C+++RCRtCCk++gf+C+thvkstWvp +kr+ ++q+++ +++++ + skr FANhyb_rscf00000261.1.g00013.1 21 RSRCEDCGNKAKKECVYMRCRTCCKNKGFQCQTHVKSTWVPLYKRSLLHEQQHSYDDYHQQQRlavdqghvFINPSKRL 99 579******************************************9877766666555555545666653333344444 PP DUF702 76 relkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGl 152 r+ ++ s+++ ++ + + e++++P+ev+++a f+ vrvss+dd + +++aYqt+v+igGhvf+GiLydqG+ FANhyb_rscf00000261.1.g00013.1 100 RQ--HNPCSSSAVNLSMEGLDRDHQEANNFPAEVNTMAKFQGVRVSSMDDmvDLDQYAYQTSVTIGGHVFRGILYDQGP 176 44..4555555555555677788899999*********************766689**********************9 PP DUF702 153 e 153 + FANhyb_rscf00000261.1.g00013.1 177 A 177 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.5E-52 | 22 | 176 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.9E-26 | 24 | 65 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.1E-21 | 127 | 176 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MVRLRQGGGG GGGQGLTMGS RSRCEDCGNK AKKECVYMRC RTCCKNKGFQ CQTHVKSTWV 60 PLYKRSLLHE QQHSYDDYHQ QQRLAVDQGH VFINPSKRLR QHNPCSSSAV NLSMEGLDRD 120 HQEANNFPAE VNTMAKFQGV RVSSMDDMVD LDQYAYQTSV TIGGHVFRGI LYDQGPAVHQ 180 MSSYTTSASA ADQPHLPTSF SYQLVNPFNS SMPAGSHHPV V |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011458269.1 | 1e-162 | PREDICTED: protein SHI RELATED SEQUENCE 1 isoform X1 | ||||
TrEMBL | A0A2P6PPR9 | 1e-113 | A0A2P6PPR9_ROSCH; Putative transcription factor STY-LRP1 family | ||||
STRING | XP_004292419.1 | 1e-160 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 2e-42 | SHI-related sequence3 |