PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000253.1.g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 28018.6 Da PI: 6.7709 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.4e-19 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+t eAa a++aa++kl+g FANhyb_rscf00000253.1.g00013.1 43 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAATAYDAAARKLYG 92 69****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.55E-22 | 42 | 102 | No hit | No description |
PROSITE profile | PS51032 | 22.339 | 43 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 43 | 101 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 43 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-21 | 43 | 102 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.8E-35 | 43 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MLKSGMGSSV GVAERKTMKK PAQASSRKGC MRGKGGPENA MCTYKGVRQR TWGKWVAEIR 60 EPNRGARLWL GTFDTSHEAA TAYDAAARKL YGSEAKLNLP DQIVPQFPNP PPVLNNNLHM 120 APVVNSSSSN TAACFPPDIS VPIMLQDRTN FPVQIPFPNP GMQTSYGIAY EQASSSSSTS 180 SGSNTTMPMD TKEEKYEGVD KRFWENVSTN VLPVFDDSIW AEAAMSLDFP VIENHGIFAS 240 NFVDGNAWEA LPASWCA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-17 | 44 | 100 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459131.1 | 1e-165 | PREDICTED: dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A3Q8TCZ1 | 1e-168 | A0A3Q8TCZ1_FRAAN; Transcription factor ERF31 | ||||
STRING | XP_004292958.1 | 1e-164 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 3e-48 | ERF family protein |