PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000253.1.g00010.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family BBR-BPC
Protein Properties Length: 702aa    MW: 77344.9 Da    PI: 7.5135
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000253.1.g00010.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind389.45.3e-1193627021301
                       GAGA_bind   1 mdddgsre..rnkg.yye...........pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrd 64 
                                     mdd g++e  r k+ +y+           p+ +s+k     q+m+++aerda+i+ern+a+sekkaa+aerdmaflqrd
  FANhyb_rscf00000253.1.g00010.1 362 MDDGGHHEngRLKAeQYKaaqgqwlmqhqPHqPSMK-----QIMALMAERDAAIQERNVAFSEKKAALAERDMAFLQRD 435
                                     899999888999999999888877765542234555.....************************************** PP

                       GAGA_bind  65 kalaernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealp 136
                                     +a+aern+a++erdn++++l+++ens+      s++p+g+q+++g k++++ qq +++ p++++ ++++re++++++lp
  FANhyb_rscf00000253.1.g00010.1 436 AAIAERNNAIMERDNAIATLQYRENSSLtsgnmSSCPPGCQISRGIKHMHNPQQhVHHlPHMNEASYGTREMHTNDSLP 514
                                     *************************988899999********************55559******************** PP

                       GAGA_bind 137 ieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader............................. 186
                                     +   ++ a ++++      +k+pke+k+  ++kk++ks +kvk+es+d +                             
  FANhyb_rscf00000253.1.g00010.1 515 LPPDPPPAPKSRQ------TKRPKEPKTIPPNKKPAKSPRKVKRESEDLNkmtfdrlhewkggqemcggaedlnkqlgv 587
                                     9887766555544......4577777777777777778888888887744478888999******************** PP

                       GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265
                                     sk+++k++dl+ln+v++D+st+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af
  FANhyb_rscf00000253.1.g00010.1 588 SKSDWKCQDLGLNQVAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTMSIYPLPAVPNKRHARVGGRKMSGSAF 666
                                     ******************************************************************************* PP

                       GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                     +klL++LaaeG+dlsnpvDLkd WAkHGtn+++ti+
  FANhyb_rscf00000253.1.g00010.1 667 NKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 702
                                     ***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM006455.2E-974209IPR000668Peptidase C1A, papain C-terminal
PRINTSPR007052.5E-61126IPR000668Peptidase C1A, papain C-terminal
SuperFamilySSF540011.42E-7714210No hitNo description
CDDcd022486.91E-9115208No hitNo description
PfamPF001123.5E-7115208IPR000668Peptidase C1A, papain C-terminal
Gene3DG3DSA:3.90.70.103.3E-8115209No hitNo description
PROSITE patternPS006390152162IPR025660Cysteine peptidase, histidine active site
PRINTSPR007052.5E-6154164IPR000668Peptidase C1A, papain C-terminal
PROSITE patternPS006400169188IPR025661Cysteine peptidase, asparagine active site
PRINTSPR007052.5E-6169175IPR000668Peptidase C1A, papain C-terminal
SuperFamilySSF572771.69E-6226259No hitNo description
SMARTSM002773.8E-22229286IPR000118Granulin
PfamPF003962.2E-10240287IPR000118Granulin
PfamPF062171.0E-102362702IPR010409GAGA-binding transcriptional activator
SMARTSM012261.1E-172362702IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MYSLEYINIF NICTGACWSF SATGAIEGIN KIVTGSLVSL SEQELIDCDR VYPNSGCNGG  60
LMDDAFQFII DNNGIDTEED YPYQGADGTC NKQKLKRHVV TIDGYTDVPA NNEEQLLKAV  120
ATQPVSVGIA GSGREFQFYS KGIFAGPCST TLDHAVLIVG YGSENGVDYW IVKNSWGKNW  180
GMNGYIHMLR DHSNSKGLCG INMLASYPTK TGENPPFPPP SPPPGPTKCD LFSKCGVGET  240
CCCAKKILGI CLSWRCCELA SAVCCKDRLH CCPHDYPICD TERNYCLQPK SLKILLLLPP  300
DHHSFTAFPS SSSSSSQIRV SPSYLGLVFG AGWDWFGVLG FMGSGYLILG SELDSVLCSE  360
LMDDGGHHEN GRLKAEQYKA AQGQWLMQHQ PHQPSMKQIM ALMAERDAAI QERNVAFSEK  420
KAALAERDMA FLQRDAAIAE RNNAIMERDN AIATLQYREN SSLTSGNMSS CPPGCQISRG  480
IKHMHNPQQH VHHLPHMNEA SYGTREMHTN DSLPLPPDPP PAPKSRQTKR PKEPKTIPPN  540
KKPAKSPRKV KRESEDLNKM TFDRLHEWKG GQEMCGGAED LNKQLGVSKS DWKCQDLGLN  600
QVAYDDSTMP APVCSCTGVL RQCYKWGNGG WQSSCCTTTM SIYPLPAVPN KRHARVGGRK  660
MSGSAFNKLL SRLAAEGHDL SNPVDLKDNW AKHGTNRYIT IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1aec_A4e-751521023217ACTINIDIN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291398.10.0PREDICTED: protein BASIC PENTACYSTEINE6
STRINGXP_004291398.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-147basic pentacysteine 6