PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000253.1.g00006.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C3H

Protein Properties

Length: 400aa MW: 43415.8 Da PI: 6.7048

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000253.1.g00006.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.6e-06	351	373	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f + C++G++C+F H+ FANhyb_rscf00000253.1.g00006.1 351 KPCIYFNSSRGCRHGANCSFQHD 373 69********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.286	347	375	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	351	374	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-4	351	373	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MSPTLEPLPT WEGKIVVLTS AFTAEACKTK KAKGSGLRFS KNSLDVSDLY FWGRALNYAG 60 VVLNFAWQVV AGEESKEVES ENQRELRVLE AVYPRPSAIP PNPFIDVEES SHNDAQPLSI 120 PITPIEEEDV AIATSSELMV PFKIPTSSPS FLSMHGTPAQ SQSNAASNRD LMASNKPTAG 180 TPIGLEPNVV AAALGAIMNG NNEQGNIDHE LLIKILSNPK MIEKLVTDPQ AVTRSPSMSS 240 SDPIPLHIHN AESITPLSTA PSSGHFYPQA NMGGMGHLSD PSLLSTVPVS SSPAVVPPAK 300 DINYYKSLIQ QHGGDRHDSF PPFSNHRSPH SGNQESFNGY KSRDPKPKIM KPCIYFNSSR 360 GCRHGANCSF QHDASFQQQG SRVPEVQSSK RMKFDREISS

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MSPTLEPLPT WEGKIVVLTS AFTAEACKTK KAKGSGLRFS KNSLDVSDLY FWGRALNYAG  60
VVLNFAWQVV AGEESKEVES ENQRELRVLE AVYPRPSAIP PNPFIDVEES SHNDAQPLSI  120
PITPIEEEDV AIATSSELMV PFKIPTSSPS FLSMHGTPAQ SQSNAASNRD LMASNKPTAG  180
TPIGLEPNVV AAALGAIMNG NNEQGNIDHE LLIKILSNPK MIEKLVTDPQ AVTRSPSMSS  240
SDPIPLHIHN AESITPLSTA PSSGHFYPQA NMGGMGHLSD PSLLSTVPVS SSPAVVPPAK  300
DINYYKSLIQ QHGGDRHDSF PPFSNHRSPH SGNQESFNGY KSRDPKPKIM KPCIYFNSSR  360
GCRHGANCSF QHDASFQQQG SRVPEVQSSK RMKFDREISS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004291394.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 6
TrEMBL	A0A2P6PZ25	0.0	A0A2P6PZ25_ROSCH; Putative transcription factor C3H family
STRING	XP_004291394.1	0.0	(Fragaria vesca)